Author details

Full Name

Richa Agarwala

Affiliation

National Center for Biotechnology Information, National Institutes of Health

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

Christopher Churas (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35259246	Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.	J Food Prot	2022
34289805	SAUTE: sequence assembly using target enrichment.	BMC Bioinformatics	2021
32315028	SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees.	Gigascience	2020
30395293	Database resources of the National Center for Biotechnology Information.	Nucleic Acids Res	2019
30286803	SKESA: strategic k-mer extension for scrupulous assemblies.	Genome Biol	2018
29372115	Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.	PeerJ	2017
26742787	X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.	BMC Genomics	2016
27151797	Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006.	Genome Announc	2016
26988048	Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia.	Genome Announc	2016
26988047	Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain.	Genome Announc	2016
25865046	A Hereditary Form of Small Intestinal Carcinoid Associated With a Germline Mutation in Inositol Polyphosphate Multikinase.	Gastroenterology	2015
26607897	Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006.	Genome Announc	2015
26494672	Genome Sequences of Multidrug-Resistant Salmonella enterica Serovar Paratyphi B (dT+) and Heidelberg Strains from the Colombian Poultry Chain.	Genome Announc	2015
25373144	Single haplotype assembly of the human genome from a hydatidiform mole.	Genome Res	2014
23925440	Accuracy and coverage assessment of Oryctolagus cuniculus (rabbit) genes encoding immunoglobulins in the whole genome sequence assembly (OryCun2.0) and localization of the IGH locus to chromosome 20.	Immunogenetics	2013
22510480	Domain enhanced lookup time accelerated BLAST.	Biol Direct	2012
23138292	Assuring the quality of next-generation sequencing in clinical laboratory practice.	Nat Biotechnol	2012
21750661	Modernizing reference genome assemblies.	PLoS Biol	2011
23239928	Comparative analysis of genome sequences of the Th2 cytokine region of rabbit (Oryctolagus cuniculus) with those of nine different species.	Immunol Immunogenet Insights	2011
21643798	A novel mitofusin 2 mutation causes canine fetal-onset neuroaxonal dystrophy.	Neurogenetics	2011
20433770	PedHunter 2.0 and its usage to characterize the founder structure of the Old Order Amish of Lancaster County.	BMC Med Genet	2010
18940865	The National Center for Biotechnology Information's Protein Clusters Database.	Nucleic Acids Res	2009
19468303	Lineage-specific biology revealed by a finished genome assembly of the mouse.	PLoS Biol	2009
19088134	PSI-BLAST pseudocounts and the minimum description length principle.	Nucleic Acids Res	2009
18951970	A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae.	Genomics	2009
17898540	Investigations of the Y chromosome, male founder structure and YSTR mutation rates in the Old Order Amish.	Hum Hered	2008
18931483	A 4,103 marker integrated physical and comparative map of the horse genome.	Cytogenet Genome Res	2008
19014630	Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20.	BMC Genomics	2008
18567917	Database indexing for production MegaBLAST searches.	Bioinformatics	2008
18307583	First radiation hybrid map of the river buffalo X chromosome (BBUX) and comparison with BTAX.	Anim Genet	2008
16916595	High-resolution gene maps of horse chromosomes 14 and 21: additional insights into evolution and rearrangements of HSA5 homologs in mammals.	Genomics	2007
18253035	A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 7 and comparative mapping to the cattle and human genomes.	Cytogenet Genome Res	2007
17921491	Improved BLAST searches using longer words for protein seeding.	Bioinformatics	2007
17975172	Initial sequence and comparative analysis of the cat genome.	Genome Res	2007
18160788	A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 1 (BBU1).	Cytogenet Genome Res	2007
17559550	Preliminary radiation hybrid map for river buffalo chromosome 6 and comparison to bovine chromosome 3.	Anim Genet	2007
17332019	COBALT: constraint-based alignment tool for multiple protein sequences.	Bioinformatics	2007
17332018	rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.	Bioinformatics	2007
17506851	Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure.	Insect Mol Biol	2007
17403053	Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10.	Anim Genet	2007
16997530	A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes.	Genomics	2007
16287941	WindowMasker: window-based masker for sequenced genomes.	Bioinformatics	2006
17068079	Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches.	Nucleic Acids Res	2006
17156431	Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST.	BMC Biol	2006
16796549	A fast and symmetric DUST implementation to mask low-complexity DNA sequences.	J Comput Biol	2006
16899656	An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival.	Genome Res	2006
16484777	A 1.3-Mb interval map of equine homologs of HSA2.	Cytogenet Genome Res	2006
16510865	Does having children extend life span? A genealogical study of parity and longevity in the Amish.	J Gerontol A Biol Sci Med Sci	2006
16596168	Novel gene acquisition on carnivore Y chromosomes.	PLoS Genet	2006
16039092	A rhesus macaque radiation hybrid map and comparative analysis with the human genome.	Genomics	2005

1 - 50 of 71

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 21

Alvaro Martinez Barrio

Uppsala University

Career Start Year 2007

Number of shared co-authors 7

Andrew Cree

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 74

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Career Start Year 2005

Number of shared co-authors 57

Jeffrey A Rosenfeld

Cancer Institute of New Jersey

Career Start Year 2004

Number of shared co-authors 9

Jennifer Hume

Baylor College of Medicine

Career Start Year 2004

Number of shared co-authors 66

Aleksey V Zimin

Center for Computational Biology, Johns Hopkins University

Career Start Year 2003

Number of shared co-authors 21

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 74

Bernard Suh

Center for Biomolecular Science and Engineering, University of California

Career Start Year 2002

Number of shared co-authors 22

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 8

Can Alkan

Bilkent University

Career Start Year 2001

Number of shared co-authors 36

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 42

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 14

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 11

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 40

Louxin Zhang

National University of Singapore

Career Start Year 1996

Number of shared co-authors 2

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 0

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 8

Aaron L Halpern

Illumina Inc.

Career Start Year 1995

Number of shared co-authors 37

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 57

Sorin Istrail

Center for Computational Molecular Biology, Brown University

Career Start Year 1994

Number of shared co-authors 19

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 25

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 28

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 57

Robert W Cottingham

Oak Ridge National Laboratory

Career Start Year 1991

Number of shared co-authors 4

Mark D Adams

Case Western Reserve University School of Medicine

Career Start Year 1989

Number of shared co-authors 57

Eugene W Myers

Max Planck Institute of Molecular Cell Biology and Genetics

Career Start Year 1986

Number of shared co-authors 40

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 64

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 12

Michael S Waterman

Biocomplexity Institute and Initiative

Career Start Year 1977

Number of shared co-authors 18

row(s) 1 - 30 of 30

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Co-authored papers 46

William J Murphy

Co-authored papers 8

Deanna M Church

Present address: Inscripta Inc.

Co-authored papers 6

Stephen J O'Brien

Co-authored papers 6

Leslie G Biesecker

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 6

Toni I Pollin

University of Maryland School of Medicine

Co-authored papers 5

Evan E Eichler

University of Washington

Co-authored papers 4

Richard K Wilson

The Ohio State University

Co-authored papers 4

Elaine R Mardis

The Ohio State University

Co-authored papers 4

Robert S Fulton

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 4

Tina Graves

McDonnell Genome Institute, Washington University

Co-authored papers 4

Alan R Shuldiner

University of Maryland School of Medicine

Co-authored papers 4

Braxton D Mitchell

Co-authored papers 4

Michele Clamp

Harvard University

Co-authored papers 3

Jeffrey R O'Connell

University of Maryland School of Medicine

Co-authored papers 3

Tim Hubbard

Co-authored papers 3

LaDeana W Hillier

University of Washington

Co-authored papers 3

William Klimke

Co-authored papers 3

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 3

Donna R Maglott

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 3

Lucinda Fulton

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 3

Kerstin Lindblad-Toh

Uppsala University

Co-authored papers 3

Michael C Zody

Broad Institute of Harvard and MIT

Co-authored papers 3

Robert M Stephens

Frederick National Laboratory for Cancer Research, Inc.

Co-authored papers 3

Douglas R Smith

Co-authored papers 3

Lucy Matthews

University of Oxford

Co-authored papers 3

Clair A Francomano

Indiana University School of Medicine

Co-authored papers 3

Chris P Ponting

The University of Edinburgh

Co-authored papers 3

Chris Clee

Co-authored papers 2

Robert W Plumb

Co-authored papers 2

1 - 30

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