Author details

Full Name

Benjamin J Ainscough

Affiliation

McDonnell Genome Institute, Washington University in St Louis School of Medicine

ORCID

Career Start Year

2014

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36373660	CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.	Nucleic Acids Res	2023
35624339	A community approach to the cancer-variant-interpretation bottleneck.	Nat Cancer	2022
30287923	Standard operating procedure for somatic variant refinement of sequencing data with paired tumor andÂ normal samples.	Genet Med	2019
30397337	A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data.	Nat Genet	2018
30181556	The prognostic effects of somatic mutations in ER-positive breast cancer.	Nat Commun	2018
30429476	Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer.	Nat Commun	2018
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
27154141	High-performance web services for querying gene and variant annotation.	Genome Biol	2016
26531824	DGIdb 2.0: mining clinically relevant drug-gene interactions.	Nucleic Acids Res	2016
27684579	DoCM: a database of curated mutations in cancer.	Nat Methods	2016
27181063	Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia.	Exp Hematol	2016
25409150	Convergent loss of PTEN leads to clinical resistance to a PI(3)KÎ± inhibitor.	Nature	2015
26248053	Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.	PLoS Comput Biol	2015
26158448	Genome Modeling System: A Knowledge Management Platform for Genomics.	PLoS Comput Biol	2015
24548642	Phosphorylated tau-AÎ²42 ratio as a continuous trait for biomarker discovery for early-stage Alzheimer's disease in multiplex immunoassay panels of cerebrospinal fluid.	Biol Psychiatry	2014
25340798	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	PLoS Genet	2014
25222080	Organizing knowledge to enable personalization of medicine in cancer.	Genome Biol	2014

1 - 17 of 17

Hui Yu

Sylvester Comprehensive Cancer Center, University of Miami

Career Start Year 2017

Number of shared co-authors 0

Job van Riet

Erasmus MC Cancer Institute

Career Start Year 2017

Number of shared co-authors 0

Daniel H??bschmann

Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM)

Career Start Year 2016

Number of shared co-authors 4

Ritika Kundra

Memorial Sloan Kettering Cancer Center

Career Start Year 2016

Number of shared co-authors 3

Kuan-Lin Huang

Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 23

Arshi Arora

Memorial Sloan Kettering Cancer Center

Career Start Year 2011

Number of shared co-authors 0

Jianjiong Gao

Memorial Sloan Kettering Cancer Center

Career Start Year 2009

Number of shared co-authors 19

Stephen R Piccolo

Brigham Young University

Career Start Year 2008

Number of shared co-authors 2

Dmitriy Sonkin

National Cancer Institute

Career Start Year 2008

Number of shared co-authors 31

Hannah Carter

University of California San Diego

Career Start Year 2008

Number of shared co-authors 3

Miguel Vazquez

Norwegian University of Science and Technology

Career Start Year 2008

Number of shared co-authors 5

Sigve Nakken

University of Oslo

Career Start Year 2007

Number of shared co-authors 1

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 1

Justin Guinney

University of Washington

Career Start Year 2006

Number of shared co-authors 7

Nicola Waddell

QIMR Berghofer Medical Research Institute

Career Start Year 2006

Number of shared co-authors 2

Ethan Cerami

Dana-Farber Cancer Institute

Career Start Year 2006

Number of shared co-authors 14

Jamie K Teer

H. Lee Moffitt Cancer Center and Research Institute

Career Start Year 2005

Number of shared co-authors 3

Matthew D Wilkerson

Uniformed Services University of the Health Sciences

Career Start Year 2004

Number of shared co-authors 7

Nikolaus Schultz

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 19

Olivier Harismendy

University of California

Career Start Year 2003

Number of shared co-authors 0

Trevor J Pugh

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2003

Number of shared co-authors 12

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 16

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 0

Jordi Deu-Pons

Institute for Research in Biomedicine

Career Start Year 2001

Number of shared co-authors 15

Andrea Sboner

Institute for Computational Biomedicine

Career Start Year 2000

Number of shared co-authors 0

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Career Start Year 2000

Number of shared co-authors 30

Michael N Edmonson

St. Jude Children's Research Hospital

Career Start Year 1999

Number of shared co-authors 9

Rachel Karchin

Johns Hopkins University

Career Start Year 1998

Number of shared co-authors 6

John V Pearson

QIMR Berghofer Medical Research Institute

Career Start Year 1996

Number of shared co-authors 3

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 0

row(s) 1 - 30 of 30

Obi L Griffith

Washington University

Co-authored papers 15

Malachi Griffith

Washington University

Co-authored papers 13

Elaine R Mardis

The Ohio State University

Co-authored papers 11

Katie M Campbell

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 9

Zachary L Skidmore

Washington University in St. Louis School of Medicine

Co-authored papers 9

Nicholas C Spies

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 9

Kilannin Krysiak

Washington University School of Medicine

Co-authored papers 8

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 8

Jason Walker

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 7

Richard K Wilson

The Ohio State University

Co-authored papers 7

Joshua F McMichael

Washington University

Co-authored papers 7

Adam C Coffman

Washington University