Author details

Full Name

Sorin Istrail

Affiliation

Center for Computational Molecular Biology, Brown University

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35727100	Michael Waterman's Contributions to Computational Biology and Bioinformatics.	J Comput Biol	2022
32160037	Preface Special Issue: RECOMB 2018.	J Comput Biol	2020
32657373	Combinatorial and statistical prediction of gene expression from haplotype sequence.	Bioinformatics	2020
32702417	Proteinarium: Multi-sample protein-protein interaction analysis and visualization tool.	Genomics	2020
31166788	How Does the Regulatory Genome Work?	J Comput Biol	2019
31356126	Eric Davidson's Regulatory Genome for Computer Science: Causality, Logic, and Proof Principles of the Genomic <i>cis</i>-Regulatory Code.	J Comput Biol	2019
26825397	Eric Davidson: Master of the universe.	Dev Biol	2016
27419147	Global Comparison of Drug Resistance Mutations After First-Line Antiretroviral Therapy Across Human Immunodeficiency Virus-1 Subtypes.	Open Forum Infect Dis	2015
24297529	Tumor haplotype assembly algorithms for cancer genomics.	Pac Symp Biocomput	2014
25122115	Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance.	PLoS One	2014
23298525	Pathway-based genetic analysis of preterm birth.	Genomics	2013
24209906	Pathway-based analysis of genomic variation data.	Curr Opin Genet Dev	2013
23830515	Intellectual disability is associated with increased runs of homozygosity in simplex autism.	Am J Hum Genet	2013
23813004	Haplotype assembly in polyploid genomes and identical by descent shared tracts.	Bioinformatics	2013
23731568	A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems.	Evodevo	2013
22323062	dbPTB: a database for preterm birth.	Database (Oxford)	2012
22697235	HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data.	J Comput Biol	2012
22689755	DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism.	Bioinformatics	2012
22822410	Global analysis of sequence diversity within HIV-1 subtypes across geographic regions.	Future Virol	2012
21121036	Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants.	Pac Symp Biocomput	2011
23202421	QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.	In Silico Biol	2011
21385037	The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS.	J Comput Biol	2011
20142491	Functional cis-regulatory genomics for systems biology.	Proc Natl Acad Sci U S A	2010
20827603	Practical computational methods for regulatory genomics: a cisGRN-Lexicon and cisGRN-browser for gene regulatory networks.	Methods Mol Biol	2010
20583925	The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy.	J Comput Biol	2010
17822690	The regulatory genome and the computer.	Dev Biol	2007
17048467	Islands of tractability for parsimony haplotyping.	IEEE/ACM Trans Comput Biol Bioinform	2006
17095691	The genome of the sea urchin Strongylocentrotus purpuratus.	Science	2006
17095694	The transcriptome of the sea urchin embryo.	Science	2006
15781572	The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.	Genome Res	2005
16447963	Islands of tractability for parsimony haplotyping.	Proc IEEE Comput Syst Bioinform Conf	2005
16108715	Finding anchors for genomic sequence comparison.	J Comput Biol	2005
15632090	Gene and alternative splicing annotation with AIR.	Genome Res	2005
15788531	Logic functions of the genomic cis-regulatory code.	Proc Natl Acad Sci U S A	2005
15072687	1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap.	J Comput Biol	2004
15812176	Optimal selection of SNP markers for disease association studies.	Hum Hered	2004
15289481	Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies.	Genome Res	2004
15326311	Comparative immunopeptidomics of humans and their pathogens.	Proc Natl Acad Sci U S A	2004
14769938	Whole-genome shotgun assembly and comparison of human genome assemblies.	Proc Natl Acad Sci U S A	2004
12676048	Robustness of inference of haplotype block structure.	J Comput Biol	2003
16826643	Epitope prediction algorithms for peptide-based vaccine design.	Proc IEEE Comput Soc Bioinform Conf	2003
12002221	Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem.	Brief Bioinform	2002
11181995	The sequence of the human genome.	Science	2001
11316883	Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues.	Protein Sci	2001
10421520	Lattice simulations of aggregation funnels for protein folding.	J Comput Biol	1999
9278058	Lattice and off-lattice side chain models of protein folding: linear time structure prediction better than 86% of optimal.	J Comput Biol	1997
9109034	Robust proofs of NP-hardness for protein folding: general lattices and energy potentials.	J Comput Biol	1997
8697239	Fast protein folding in the hydrophobic-hydrophilic model within three-eighths of optimal.	J Comput Biol	1996
7497128	Physical mapping by STS hybridization: algorithmic strategies and the challenge of software evaluation.	J Comput Biol	1995
7952891	The chimeric mapping problem: algorithmic strategies and performance evaluation on synthetic genomic data.	Comput Chem	1994

1 - 50 of 50

Geir Kjetil Sandve

University of Oslo

Career Start Year 2006

Number of shared co-authors 0

Daniel R Zerbino

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 3

Carl Kingsford

Carnegie Mellon University

Career Start Year 2005

Number of shared co-authors 2

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Career Start Year 2005

Number of shared co-authors 15

Vikas Bansal

University of California San Diego

Career Start Year 2004

Number of shared co-authors 13

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Career Start Year 2001

Number of shared co-authors 5

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 2

Simon Cawley

Clinical Sequencing Division

Career Start Year 2000

Number of shared co-authors 123

Alexander V Favorov

Johns Hopkins School of Medicine

Career Start Year 1999

Number of shared co-authors 0

Itsik Pe'er

Columbia University

Career Start Year 1999

Number of shared co-authors 11

Michael C Wendl

Washington University in St Louis

Career Start Year 1998

Number of shared co-authors 20

Colin A Semple

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 1997

Number of shared co-authors 4

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 19

Louxin Zhang

National University of Singapore

Career Start Year 1996

Number of shared co-authors 0

Richa Agarwala

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1995

Number of shared co-authors 19

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 6

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 4

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 4

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 16

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 1

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 13

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 4

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 106

Tao Jiang

University of California riverside

Career Start Year 1992

Number of shared co-authors 0

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 23

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 16

Alun Thomas

University of Utah School of Medicine

Career Start Year 1986

Number of shared co-authors 0

David Haussler

Genomics Institute, University of California Santa Cruz

Career Start Year 1986

Number of shared co-authors 66

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Career Start Year 1986

Number of shared co-authors 59

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 56

row(s) 1 - 30 of 30

Eric H Davidson

California Institute of Technology

Co-authored papers 5

Andrew G Clark

Co-authored papers 5

Clark Mobarry

Co-authored papers 4

Francisco M De La Vega

Stanford University School of Medicine

Co-authored papers 3

Roded Sharan

Tel Aviv University

Co-authored papers 3

Allison DeLong

School of Public Health, Brown University

Co-authored papers 3

Ian Dew

Co-authored papers 3

Austin Huang

Alabama College of Osteopathic Medicine

Co-authored papers 3

Russell Turner

Co-authored papers 3

Vineet Bafna

University of California San Diego

Co-authored papers 3

Bixiong Chris Shue

Co-authored papers 2

Mark D Adams

Case Western Reserve University School of Medicine

Co-authored papers 2

Eugene W Myers

Max Planck Institute of Molecular Cell Biology and Genetics

Co-authored papers 2

Michael A Harris

Vici Syndrome Foundation

Co-authored papers 2

Arthur L Delcher

Center for Computational Biology, Johns Hopkins School of Medicine

Co-authored papers 2

Shibu Yooseph

University of Central Florida

Co-authored papers 2

R Andrew Cameron

California Institute of Technology

Co-authored papers 2

J C Venter

The J. Craig Venter Institute

Co-authored papers 2

Saul Kravitz

Co-authored papers 2

Fei Zhong

Case Western Reserve University.

Co-authored papers 2

Jongmin Nam

Center for Computational & Integrative Biology, The State University of New Jersey

Co-authored papers 2

Gene Spier

Co-authored papers 2

Waraporn Tongprasit

Co-authored papers 2

Viktor Stolc

NASA Ames Research Center

Co-authored papers 2

Oliver Kohlbacher

Max Planck Institute for Developmental Biology

Co-authored papers 2

Joel Smith

Marine Biological Laboratory

Co-authored papers 2

Knut Reinert

Institut fur Informatik, Freie Universitat Berlin

Co-authored papers 2

Karin A Remington

The J. Craig Venter Institute.

Co-authored papers 2

Manoj P Samanta

Systemix Institute

Co-authored papers 2

Peter Li

Co-authored papers 2

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators