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Author Details

Christophe Dessimoz
University of Lausanne
2005
100
43
PMIDPaper TitleJournal TitlePublished Year
37081138Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree.Nat Biotechnol2024
37962356OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.Nucleic Acids Res2024
37126713Phylogenetic profiling in eukaryotes comes of age.Proc Natl Acad Sci U S A2023
37291671Protein length distribution is remarkably uniform across the tree of life.Genome Biol2023
36972404Protein S-acylation controls the subcellular localization and biological activity of PHYTOCHROME KINASE SUBSTRATE.Plant Cell2023
34730808Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria.Mol Biol Evol2022
35794124Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins.Nat Commun2022
35426933A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem.Syst Biol2022
35561194OMAMO: orthology-based alternative model organism selection.Bioinformatics2022
35552456The Quest for Orthologs orthology benchmark service in 2022.Nucleic Acids Res2022
36561179Read2Tree: scalable and accurate phylogenetic trees from raw reads.bioRxiv2022
36097541Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.Distrib Parallel Databases2022
33174605OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.Nucleic Acids Res2021
33649511Want to track pandemic variants faster? Fix the bioinformatics bottleneck.Nature2021
33484570Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism.Genome Biol Evol2021
33871639Homoeolog Inference Methods Requiring Bidirectional Best Hits or Synteny Miss Many Pairs.Genome Biol Evol2021
33787851OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.Bioinformatics2021
34252970ISMB/ECCB 2021 proceedings.Bioinformatics2021
32374845The Quest for Orthologs benchmark service and consensus calls in 2020.Nucleic Acids Res2020
32089838Identifying orthologs with OMA: A primer.F1000Res2020
32083389Genomic Encryption of Digital Data Stored in Synthetic DNA.Angew Chem Int Ed Engl2020
33424794NGS-Based <i>S. aureus</i> Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.Front Microbiol2020
33274716A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor.Elife2020
33208096A generalized Robinson-Foulds distance for labeled trees.BMC Genomics2020
32657372Benchmarking gene ontology function predictions using negative annotations.Bioinformatics2020
32589737Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence.Genome Biol Evol2020
32697802Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes.PLoS Comput Biol2020
32184981New genome assembly of the barn owl (<i>Tyto alba alba</i>).Ecol Evol2020
32390272The phylogenetic range of bacterial and viral pathogens of vertebrates.Mol Ecol2020
30508066iHam and pyHam: visualizing and processing hierarchical orthologous groups.Bioinformatics2019
31697362Enabling semantic queries across federated bioinformatics databases.Database (Oxford)2019
31747936Structural variant calling: the long and the short of it.Genome Biol2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
30184069Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome.Bioinformatics2019
31241141Advances and Applications in the Quest for Orthologs.Mol Biol Evol2019
31278664Inferring Orthology and Paralogy.Methods Mol Biol2019
31104936Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria.Curr Biol2019
30648004Assigning confidence scores to homoeologs using fuzzy logic.PeerJ2019
29106550The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.Nucleic Acids Res2018
30022098GOATOOLS: A Python library for Gene Ontology analyses.Sci Rep2018
29851950Submit a Topic Page to PLOS Computational Biology and Wikipedia.PLoS Comput Biol2018
30423067Prioritising candidate genes causing QTL using hierarchical orthologous groups.Bioinformatics2018
29762653RecPhyloXML: a format for reconciled gene trees.Bioinformatics2018
28968857Gearing up to handle the mosaic nature of life in the quest for orthologs.Bioinformatics2018
27812933Primer on the Gene Ontology.Methods Mol Biol2017
28325942Comparative genomics reveals contraction in olfactory receptor genes in bats.Sci Rep2017
28117401Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.Nat Commun2017
28881964Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference.Bioinformatics2017
28645767Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study.Mol Phylogenet Evol2017
27812946A Gene Ontology Tutorial in Python.Methods Mol Biol2017
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Collaborators

Adrian M Altenhoff
ETH Zurich, Universitatstr. 6
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Nives ??kunca
ETH Zurich, Universitatstrasse 19
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Alex Warwick Vesztrocy
University of Lausanne
Co-authored papers 10
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Co-authored papers 8
Erik L L Sonnhammer
Stockholm University
Co-authored papers 8
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
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Marc Robinson-Rechavi
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Nick Goldman
Co-authored papers 6
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University of Southern California
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Brigitte Boeckmann
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Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
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Ioannis Xenarios
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Baylor College of Medicine
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Hospital Universitario y Politecnico la Fe
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Max Delbruck Center for Molecular Medicine (MDC)
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Marina Marcet-Houben
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Renzhi Cao
Pacific Lutheran University
Co-authored papers 2
Indika Kahanda
University of North Florida
Co-authored papers 2
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 2
Sayoni Das
University College London
Co-authored papers 2
Matteo Re
Universita degli Studi di Milano
Co-authored papers 2
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 2
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
Co-authored papers 2
Giuseppe Profiti
University of Bologna
Co-authored papers 2
Kai Hakala
University of Turku
Co-authored papers 2
Domenico Cozzetto
Imperial College London
Co-authored papers 2
Marco Mesiti
Universita degli Studi di Milano
Co-authored papers 2
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 2
Pablo S Aguilar
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Release 1.2