Author details

Full Name

Simon Cawley

Affiliation

Clinical Sequencing Division

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33863344	Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.	Genome Biol	2021
33846644	Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology.	Nat Biotechnol	2021
33863366	A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.	Genome Biol	2021
21565264	Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array.	Genomics	2011
21776081	An integrated semiconductor device enabling non-optical genome sequencing.	Nature	2011
18776908	Integrated detection and population-genetic analysis of SNPs and copy number variation.	Nat Genet	2008
18776909	Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.	Nat Genet	2008
17148510	LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage.	Bioinformatics	2007
17347569	Differential dropout among SNP genotypes and impacts on association tests.	Hum Hered	2007
16706714	Multiple testing methods for ChIP-Chip high density oligonucleotide array data.	J Comput Biol	2006
15657097	Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.	Bioinformatics	2005
17282826	Alternative base calling method for resequencing microarrays.	Conf Proc IEEE Eng Med Biol Soc	2005
16451628	Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14.	BMC Genet	2005
16451625	A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures.	BMC Genet	2005
15961447	ANOSVA: a statistical method for detecting splice variation from expression data.	Bioinformatics	2005
15057822	Genome sequence of the Brown Norway rat yields insights into mammalian evolution.	Nature	2004
15782172	Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.	Nat Methods	2004
14993201	Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.	Genome Res	2004
14980218	Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.	Cell	2004
15060007	Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.	Genome Res	2004
12824355	SLAM web server for comparative gene finding and alignment.	Nucleic Acids Res	2003
14534169	HMM sampling and applications to gene finding and alternative splicing.	Bioinformatics	2003
12618381	SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model.	Genome Res	2003
11988577	Large-scale transcriptional activity in chromosomes 21 and 22.	Science	2002
12466850	Initial sequencing and comparative analysis of the mouse genome.	Nature	2002
12015888	Applications of generalized pair hidden Markov models to alignment and gene finding problems.	J Comput Biol	2002
11738707	Phat--a gene finding program for Plasmodium falciparum.	Mol Biochem Parasitol	2001
11738710	Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species.	Mol Biochem Parasitol	2001
10731132	The genome sequence of Drosophila melanogaster.	Science	2000
11153095	DNA sequencing with transposons.	J Comput Biol	2000

1 - 30 of 30

Martin Kircher

Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin

Career Start Year 2008

Number of shared co-authors 8

James G D Prendergast

The Roslin Institute, The University of Edinburgh

Career Start Year 2005

Number of shared co-authors 14

Shane McCarthy

Wellcome Sanger Institute

Career Start Year 2004

Number of shared co-authors 32

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 9

Vikas Bansal

University of California San Diego

Career Start Year 2004

Number of shared co-authors 12

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 76

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 85

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 35

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 14

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 0

Alexander V Favorov

Johns Hopkins School of Medicine

Career Start Year 1999

Number of shared co-authors 11

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 17

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 109

Alexandre Montpetit

McGill University and Genome Quebec Innovation Centre

Career Start Year 1998

Number of shared co-authors 36

Colin A Semple

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 1997

Number of shared co-authors 20

Sarah E Hunt

European Bioinformatics Institute

Career Start Year 1997

Number of shared co-authors 65

Simon Heath

Barcelona Institute of Science and Technology (BIST)

Career Start Year 1995

Number of shared co-authors 19

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 10

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 10

David A Hinds

23andMe Inc.

Career Start Year 1992

Number of shared co-authors 37

Thomas J Hudson

Ontario Institute for Cancer Research

Career Start Year 1991

Number of shared co-authors 62

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 4

Samuel Levy

Bluestar Genomics Inc.

Career Start Year 1991

Number of shared co-authors 101

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 74

Anthony J Brookes

University of Leicester

Career Start Year 1989

Number of shared co-authors 35

Michael E Zwick

Rutgers University-New Brunswick, Rutgers University

Career Start Year 1989

Number of shared co-authors 5

Ian Dunham

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1987

Number of shared co-authors 83

Richard M Myers

HudsonAlpha Institute for Biotechnology

Career Start Year 1980

Number of shared co-authors 102

Deborah A Nickerson

University of Washington

Career Start Year 1976

Number of shared co-authors 32

Kelly A Frazer

University of California, USA Institute for Genomic Medicine

Career Start Year 1967

Number of shared co-authors 46

row(s) 1 - 30 of 30

Lior Pachter

Co-authored papers 7

Donna M Muzny

Baylor College of Medicine

Co-authored papers 4

Richard A Gibbs

Baylor College of Medicine

Co-authored papers 4

Wendell D Jones

Department of Bioinformatics and Clinical Systems

Co-authored papers 3

Donald J Johann

Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences

Co-authored papers 3

Zhichao Liu

Co-authored papers 3

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Co-authored papers 3

Todd A Richmond

Co-authored papers 3

Jorg Drenkow

Co-authored papers 3

Rebecca Kusko

Immuneering Corporation

Co-authored papers 3

James C Willey

Co-authored papers 3

Quan-Zhen Li

Co-authored papers 3

Wenzhong Xiao

Stanford University

Co-authored papers 3

Joshua Xu

Co-authored papers 3

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Co-authored papers 3

Shan Yang

Xi'an Peihua University

Co-authored papers 3

Pierre R Bushel

Co-authored papers 3

Mark J Daly

Massachusetts General Hospital

Co-authored papers 3

Gregg A Helt

Lawrence Berkeley National Laboratory

Co-authored papers 3

Kim C Worley

Baylor College of Medicine

Co-authored papers 3

Josep F Abril

University of Barcelona

Co-authored papers 3

Colin N Dewey

Co-authored papers 3

Andreas Scherer

Institute for Molecular Medicine Finland (FIMM), University of Helsinki

Co-authored papers 3

David Kulp

Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard

Co-authored papers 3

Stefan Bekiranov

University of Virginia

Co-authored papers 3

Zhiguang Li

Co-authored papers 3

Tieliu Shi

Co-authored papers 3

Philipp Kapranov

Co-authored papers 3

Weida Tong

National Center for Toxicological Research

Co-authored papers 3

Donna Karolchik

Co-authored papers 2

1 - 30

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