|
| 34291238 | Comprehensive analysis of epigenetic signatures of human transcription control. | Mol Omics | 2021 |
| 33623376 | Identification and Characterisation of Putative Enhancer Elements in Mouse Embryonic Stem Cells. | Bioinform Biol Insights | 2021 |
| 31902707 | A Stem Cell Reporter for Investigating Pluripotency and Self-Renewal in the Rat. | Stem Cell Reports | 2020 |
| 30678090 | From Genotype to Phenotype: Through Chromatin. | Genes (Basel) | 2019 |
| 29458328 | Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells. | BMC Dev Biol | 2018 |
| 30154213 | LIF-dependent survival of embryonic stem cells is regulated by a novel palmitoylated Gab1 signalling protein. | J Cell Sci | 2018 |
| 30453943 | Insights into mammalian transcription control by systematic analysis of ChIP sequencing data. | BMC Bioinformatics | 2018 |
| 30445760 | Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor. | Int J Mol Sci | 2018 |
| 27848279 | A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny. | Stem Cells Dev | 2017 |
| 29187960 | Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs. | Comput Struct Biotechnol J | 2017 |
| 28716546 | Delineating biological and technical variance in single cell expression data. | Int J Biochem Cell Biol | 2017 |
| 28056781 | Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types. | BMC Genomics | 2017 |
| 26951854 | Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. | Comput Biol Chem | 2016 |
| 27292029 | Long-lived self-renewing bone marrow-derived macrophages displace embryo-derived cells to inhabit adult serous cavities. | Nat Commun | 2016 |
| 27378302 | Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data. | Bioinformatics | 2016 |
| 27214764 | Corrigendum: CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. | Sci Rep | 2016 |
| 26857150 | Functional transcription factor target discovery via compendia of binding and expression profiles. | Sci Rep | 2016 |
| 25717144 | Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells. | J Leukoc Biol | 2015 |
| 26619763 | Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource. | FEBS Lett | 2015 |
| 26582124 | CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. | Sci Rep | 2015 |
| 26035382 | Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice. | Dis Model Mech | 2015 |
| 25844666 | Multi-species network inference improves gene regulatory network reconstruction for early embryonic development in Drosophila. | J Comput Biol | 2015 |
| 24670764 | A promoter-level mammalian expression atlas. | Nature | 2014 |
| 25547756 | Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs. | BMC Bioinformatics | 2014 |
| 25133983 | Concerted bioinformatic analysis of the genome-scale blood transcription factor compendium reveals new control mechanisms. | Mol Biosyst | 2014 |
| 24958811 | TRES predicts transcription control in embryonic stem cells. | Bioinformatics | 2014 |
| 24590288 | Dysregulation of ubiquitin homeostasis and β-catenin signaling promote spinal muscular atrophy. | J Clin Invest | 2014 |
| 23220237 | Gene set control analysis predicts hematopoietic control mechanisms from genome-wide transcription factor binding data. | Exp Hematol | 2013 |
| 24326267 | Early dynamic fate changes in haemogenic endothelium characterized at the single-cell level. | Nat Commun | 2013 |
| 23927007 | Exploring the abomasal lymph node transcriptome for genes associated with resistance to the sheep nematode Teladorsagia circumcincta. | Vet Res | 2013 |
| 23708655 | HOX-mediated LMO2 expression in embryonic mesoderm is recapitulated in acute leukaemias. | Oncogene | 2013 |
| 23394126 | Discovery of a novel class of highly potent, selective, ATP-competitive, and orally bioavailable inhibitors of the mammalian target of rapamycin (mTOR). | J Med Chem | 2013 |
| 23524953 | Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis. | Nat Cell Biol | 2013 |
| 22429863 | A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses. | BMC Genomics | 2012 |
| 24900486 | Novel Carboxamide-Based Allosteric MEK Inhibitors: Discovery and Optimization Efforts toward XL518 (GDC-0973). | ACS Med Chem Lett | 2012 |
| 23040478 | Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal. | Cell Stem Cell | 2012 |
| 22877636 | Discovery of XL888: a novel tropane-derived small molecule inhibitor of HSP90. | Bioorg Med Chem Lett | 2012 |
| 22436024 | Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals. | FEBS J | 2012 |
| 22554697 | The transcriptional programme controlled by Runx1 during early embryonic blood development. | Dev Biol | 2012 |
| 21354129 | Maximum parsimony analysis of gene expression profiles permits the reconstruction of developmental cell lineage trees. | Dev Biol | 2011 |
| 22006020 | The transcriptional coactivator Cbp regulates self-renewal and differentiation in adult hematopoietic stem cells. | Mol Cell Biol | 2011 |
| 21840901 | Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast. | Nucleic Acids Res | 2011 |
| 21860879 | Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks. | Mol Biosyst | 2011 |
| 21571218 | Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators. | Dev Cell | 2011 |
| 21338655 | A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms. | Exp Hematol | 2011 |
| 20418949 | Module network inference from a cancer gene expression data set identifies microRNA regulated modules. | PLoS One | 2010 |
| 20230615 | Characterizing regulatory path motifs in integrated networks using perturbational data. | Genome Biol | 2010 |
| 19136553 | Module networks revisited: computational assessment and prioritization of model predictions. | Bioinformatics | 2009 |
| 19763340 | Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development. | Mol Biosyst | 2009 |
| 19422680 | Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. | BMC Syst Biol | 2009 |