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Author Details

James G D Prendergast
The Roslin Institute, The University of Edinburgh
2005
51
22
PMIDPaper TitleJournal TitlePublished Year
36624342Reply to: Genotype by sex interactions in ankylosing spondylitis.Nat Genet2023
35042461Using machine learning to detect the differential usage of novel gene isoforms.BMC Bioinformatics2022
36131008The conservation of human functional variants and their effects across livestock species.Commun Biol2022
36229544Optical mapping compendium of structural variants across global cattle breeds.Sci Data2022
36057548Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.Genet Sel Evol2022
34031201Rare Missense Functional Variants at <i>COL4A1</i> and <i>COL4A2</i> in Sporadic Intracerebral Hemorrhage.Neurology2021
33743998Corrigendum to "Inverted CD4 +/CD8+T cell ratio in Boran (Bos indicus) cattle" [Vet. Immunol. Immunopathol. 230 110126].Vet Immunol Immunopathol2021
33501931Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations.Genome Biol Evol2021
34383887nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over.Genome Biol Evol2021
34493869Sex differences in genetic architecture in the UK Biobank.Nat Genet2021
34804994Inherited Tolerance in Cattle to the Apicomplexan Protozoan <i>Theileria parva</i> is Associated with Decreased Proliferation of Parasite-Infected Lymphocytes.Front Cell Infect Microbiol2021
34660767Clinical Evaluation of Corridor Disease in <i>Bos indicus</i> (Boran) Cattle Naturally Infected With Buffalo-Derived <i>Theileria parva</i>.Front Vet Sci2021
34388204Identification and functional modelling of plausibly causative cis-regulatory variants in a highly-selected cohort with X-linked intellectual disability.PLoS One2021
32793601Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian Macrophages.Front Cell Dev Biol2020
31953380Using regulatory variants to detect gene-gene interactions identifies networks of genes linked to cell immortalisation.Nat Commun2020
31793067Loss-of-Function Mutations in the ALPL Gene Presenting with Adult Onset Osteoporosis and Low Serum Concentrations of Total Alkaline Phosphatase.J Bone Miner Res2020
33080530Inverted CD4<sup>+</sup>/CD8<sup>+</sup> T cell ratio in Boran (Bos indicus) cattle.Vet Immunol Immunopathol2020
33214626Investigating the origin and authenticity of Victoria Cross medals using X-ray fluorescence spectrometry.Sci Rep2020
30696701Arginine to Glutamine Variant in Olfactomedin Like 3 (OLFML3) Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed.G3 (Bethesda)2019
31765389Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions.PLoS Genet2019
31162046Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion.Elife2019
30689878Linked Mutations at Adjacent Nucleotides Have Shaped Human Population Differentiation and Protein Evolution.Genome Biol Evol2019
29207374Age-related gene expression changes, and transcriptome wide association study of physical and cognitive aging traits, in the Lothian Birth Cohort 1936.Aging (Albany NY)2017
28282383Shared regulatory sites are abundant in the human genome and shed light on genome evolution and disease pleiotropy.PLoS Genet2017
28494016The host ubiquitin-dependent segregase VCP/p97 is required for the onset of human cytomegalovirus replication.PLoS Pathog2017
28493397A recurrent de novo mutation in ACTG1 causes isolated ocular coloboma.Hum Mutat2017
25744449Exome sequencing to detect rare variants associated with general cognitive ability: a pilot study.Twin Res Hum Genet2015
26248562hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets.Mol Biol Evol2015
26173456Homozygous loss-of-function variants in European cosmopolitan and isolate populations.Hum Mol Genet2015
24670764A promoter-level mammalian expression atlas.Nature2014
24966180Sequence-level mechanisms of human epigenome evolution.Genome Biol Evol2014
23531360Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.Genome Biol2013
23874685Local exome sequences facilitate imputation of less common variants and increase power of genome wide association studies.PLoS One2013
23737755Side effects: substantial non-neutral evolution flanking regulatory sites.PLoS Genet2013
23416946Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.Nat Struct Mol Biol2013
22021194Genome-wide methylation profiling in Crohn's disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway.Inflamm Bowel Dis2012
22634755Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.Nat Genet2012
22607690A genome-wide screen in human embryonic stem cells reveals novel sites of allele-specific histone modification associated with known disease loci.Epigenetics Chromatin2012
21408607Sequencing illustrates the transcriptional response of Legionella pneumophila during infection and identifies seventy novel small non-coding RNAs.PLoS One2011
22077970Abundant pleiotropy in human complex diseases and traits.Am J Hum Genet2011
21903742Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.Genome Res2011
21531788Fine-mapping of colorectal cancer susceptibility loci at 8q23.3, 16q22.1 and 19q13.11: refinement of association signals and use of in silico analysis to suggest functional variation and unexpected candidate target genes.Hum Mol Genet2011
21655089Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer.PLoS Genet2011
20972440Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.Nat Genet2010
20822512Sequencing and analysis of an Irish human genome.Genome Biol2010
18372901Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.Nat Genet2008
19011631Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.Nat Genet2008
18372905A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.Nat Genet2008
17490477Chromatin structure and evolution in the human genome.BMC Evol Biol2007
17618283Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.Nat Genet2007
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Collaborators

Harry Campbell
Co-authored papers 13
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 11
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 6
Paul D P Pharoah
Center for Cancer Genetic Epidemiology, University of Cambridge
Co-authored papers 6
Steven Gallinger
Lunenfeld Tanenbaum Research Institute, Mount Sinai Hospital, University of Toronto
Co-authored papers 6
James F Wilson
Co-authored papers 5
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 4
Igor Rudan
Co-authored papers 4
Alexandre Montpetit
McGill University and Genome Quebec Innovation Centre
Co-authored papers 3
Caroline Hayward
Co-authored papers 3
Thomas J Hudson
Ontario Institute for Cancer Research
Co-authored papers 3
Brent W Zanke
University of Toronto
Co-authored papers 3
Henry V??lzke
Institute for Community Medicine, Ernst Moritz Arndt University
Co-authored papers 3
Nicholas D Hastie
Co-authored papers 3
Alan F Wright
Co-authored papers 3
Veronique Vitart
Co-authored papers 3
David V Conti
Co-authored papers 3
Kim M Summers
Mater Research Institute-University of Queensland, Translational Research Institute
Co-authored papers 3
Stefan Schreiber
Co-authored papers 3
Ozren Polasek
Co-authored papers 2
Celia M T Greenwood
Co-authored papers 2
Jagadish Rangrej
Ontario Ministry of Health and Long-Term Care
Co-authored papers 2
Yusuke Nakamura
Japanese Foundation for Cancer Research
Co-authored papers 2
Claire Palles
Institute of Cancer and Genomic Sciences, University of Birmingham
Co-authored papers 2
Angel Carracedo
Co-authored papers 2
Anneke Lucassen
Clinical Ethics, University of Oxford
Co-authored papers 2
Jenny Chang-Claude
German Cancer Research Center (DKFZ)
Co-authored papers 2
Alison Meynert
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 2
Riccardo E Marioni
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 2
Ross M Fraser
Co-authored papers 2
Release 1.2