Author details

Full Name

Vera Pancaldi

Affiliation

Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36609404	Publisher Correction: Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker.	Clin Epigenetics	2023
37865700	3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription.	Nat Commun	2023
37561790	From time-series transcriptomics to gene regulatory networks: A review on inference methods.	PLoS Comput Biol	2023
37501683	Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness.	Cancer Res Commun	2023
36993595	<i>mosna</i> reveals different types of cellular interactions predictive of response to immunotherapies in cancer.	bioRxiv	2023
37245241	Network models of chromatin structure.	Curr Opin Genet Dev	2023
37332613	An agent-based model of monocyte differentiation into tumour-associated macrophages in chronic lymphocytic leukemia.	iScience	2023
35038581	The antitumoral activity of TLR7 ligands is corrupted by the microenvironment of pancreatic tumors.	Mol Ther	2022
36453993	3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells.	Nucleic Acids Res	2022
36376973	Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker.	Clin Epigenetics	2022
34066960	Low Replicative Stress Triggers Cell-Type Specific Inheritable Advanced Replication Timing.	Int J Mol Sci	2021
36303769	Chromatin Network Analyses: Towards Structure-Function Relationships in Epigenomics.	Front Bioinform	2021
33760042	Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia.	J Exp Med	2021
34648034	STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells.	Nucleic Acids Res	2021
34433496	Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.	Genome Biol	2021
34680392	Activation of Vitamin D Receptor Pathway Enhances Differentiating Capacity in Acute Myeloid Leukemia with Isocitrate Dehydrogenase Mutations.	Cancers (Basel)	2021
34353350	Community-wide hackathons to identify central themes in single-cell multi-omics.	Genome Biol	2021
34213523	Tysserand-fast and accurate reconstruction of spatial networks from bioimages.	Bioinformatics	2021
32251458	Unveiling new disease, pathway, and gene associations via multi-scale neural network.	PLoS One	2020
33053331	Eomes-Dependent Loss of the Co-activating Receptor CD226 Restrains CD8<sup>+</sup> T Cell Anti-tumor Functions and Limits the Efficacy of Cancer Immunotherapy.	Immunity	2020
33333028	How Has the COVID-19 Pandemic Changed How You Will Approach Research and Lab Work in the Future?	Cell Syst	2020
33274348	CovMulNet19, Integrating Proteins, Diseases, Drugs, and Symptoms: A Network Medicine Approach to COVID-19.	Netw Syst Med	2020
33297362	Insights on TAM Formation from a Boolean Model of Macrophage Polarization Based on In Vitro Studies.	Cancers (Basel)	2020
33091381	Supporting Clinical Decision-Making during the SARS-CoV-2 Pandemic through a Global Research Commitment: The TERAVOLT Experience.	Cancer Cell	2020
32657405	Chromatin network markers of leukemia.	Bioinformatics	2020
32504002	Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships.	Nat Commun	2020
32182345	Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks.	Nucleic Acids Res	2020
32539942	COVID-19 in patients with thoracic malignancies (TERAVOLT): first results of an international, registry-based, cohort study.	Lancet Oncol	2020
32425702	TERAVOLT: Thoracic Cancers International COVID-19 Collaboration.	Cancer Cell	2020
31118054	ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C.	Genome Biol	2019
31247897	Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.	Int J Mol Sci	2019
31007884	Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer.	Mol Autism	2019
29251357	Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity.	Bioessays	2018
28934481	Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.	Nucleic Acids Res	2017
28126036	Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.	Genome Biol	2017
27196757	Chromatin Regulators as a Guide for Cancer Treatment Choice.	Mol Cancer Ther	2016
27863251	Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.	Cell	2016
27391817	Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity.	Genome Biol	2016
25632304	Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia.	Genome Med	2015
26635866	AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast.	Front Genet	2015
26053498	Whole-genome fingerprint of the DNA methylome during human B cell differentiation.	Nat Genet	2015
25888139	A Boolean gene regulatory model of heterosis and speciation.	BMC Evol Biol	2015
24463365	Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth.	Biol Open	2014
24659996	Biological noise to get a sense of direction: an analogy between chemotaxis and stress response.	Front Genet	2014
23471351	Stress induces remodelling of yeast interaction and co-expression networks.	Mol Biosyst	2013
22540037	Predicting the fission yeast protein interaction network.	G3 (Bethesda)	2012
22718785	Topology of functional networks predicts physical binding of proteins.	Bioinformatics	2012
21459850	In silico characterization and prediction of global protein-mRNA interactions in yeast.	Nucleic Acids Res	2011
20174682	Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast.	Mol Biosyst	2010
19392078	Hierarchical coarse-graining transform.	Phys Rev E Stat Nonlin Soft Matter Phys	2009

1 - 50 of 50

David van Dijk

Yale School of Medicine, Yale University

Career Start Year 2010

Number of shared co-authors 0

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 1

Indika Rajapakse

University of Michigan ann arbor

Career Start Year 2006

Number of shared co-authors 0

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 1

Jessica C Mar

Australian Institute for Bioengineering and Nanotechnology, University of Queensland

Career Start Year 2005

Number of shared co-authors 3

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Mikael Huss

Stockholm University

Career Start Year 2003

Number of shared co-authors 2

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 1

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 12

Ilya Shmulevich

Institute for Systems Biology

Career Start Year 2001

Number of shared co-authors 2

Chen-Hsiang Yeang

Institute of Statistical Science

Career Start Year 2001

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 1

Ziv Bar-Joseph

Carnegie Mellon University

Career Start Year 2001

Number of shared co-authors 0

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Career Start Year 2000

Number of shared co-authors 1

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 0

Frank Emmert-Streib

Tampere University

Career Start Year 2000

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 6

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 0

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 8

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 4

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 9

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 13

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 2

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 2

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 4

Fabian J Theis

Technical University of Munich

Career Start Year 1992

Number of shared co-authors 7

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 2

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 0

Aviv Regev

Broad Institute of MIT and Harvard

Career Start Year 1987

Number of shared co-authors 7

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

row(s) 1 - 30 of 30

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Co-authored papers 14

J??rg B??hler

University College London

Co-authored papers 7

Alexis Coullomb

INSERM

Co-authored papers 5

Annalisa Trama

Fondazione IRCSS Istituto Nazionale dei Tumori

Co-authored papers 3

Stephan Beck

UCL Cancer Institute, University College London

Co-authored papers 3

Andreas Beyer

University of Cologne

Co-authored papers 3

Hendrik G Stunnenberg

Co-authored papers 3

Reiner Siebert

Co-authored papers 3

Jos?? M Fern??ndez

Hospital Universitario y Politecnico la Fe

Co-authored papers 3

Dirk S Paul

Co-authored papers 3

Tomi Pastinen

Co-authored papers 2

Arshi Arora

Memorial Sloan Kettering Cancer Center

Co-authored papers 2

Emanuele Raineri

Barcelona Institute of Science and Technology (BIST)

Co-authored papers 2

Dario Righelli

University of Padova

Co-authored papers 2

Vincent J Carey

Brigham and Women's Hospital, Harvard Medical School

Co-authored papers 2

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Michael I Love

University of North Carolina at Chapel Hill

Co-authored papers 2

Ayshwarya Subramanian

Broad Institute of MIT and Harvard

Co-authored papers 2

Mattia Frontini

Co-authored papers 2

Pratheepa Jeganathan

McMaster University

Co-authored papers 2