Author details

Full Name

Niranjan Nagarajan

Affiliation

ORCID

Career Start Year

2004

Papers

114

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36674562	Profiling Microbial Communities in Idiopathic Granulomatous Mastitis.		2023
36259664	CREAMMIST: an integrative probabilistic database for cancer drug response prediction.	Nucleic Acids Res	2023
36997797	No evidence for a common blood microbiome based on a population study of 9,770 healthy humans.		2023
35019683	SARS-CoV-2 N Gene G29195T Point Mutation May Affect Diagnostic Reverse Transcription-PCR Detection.	Microbiol Spectr	2022
36109650	Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim 'Agnes' reveals metabolic pathways regulating floral traits.	Communications Biology	2022
36109646	Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects.	Nature Microbiology	2022
36229545	Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians.	Nature Communications	2022
35699469	Mutual Exclusion of Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Methanobrevibacter Intestini Representative.	Microbiology spectrum	2022
35876475	Dominant Carbapenemase-Encoding Plasmids in Clinical Enterobacterales Isolates and Hypervirulent Klebsiella pneumoniae, Singapore.	Emerging Infectious Diseases	2022
35365786	Metagenomics-enabled microbial surveillance.	Nature Microbiology	2022
36057769	Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella.		2022
35543562	Emergence of SARS-CoV-2 Spike Mutations during Prolonged Infection in Immunocompromised Hosts.	Microbiol Spectr	2022
35411007	Gut microbiome responses to dietary intervention with hypocholesterolemic vegetable oils.	npj Biofilms and Microbiomes	2022
35979220	Clonal serotype 1c multidrug-resistant <i>Shigella flexneri</i> detected in multiple institutions by sentinel-site sequencing.	Front Med (Lausanne)	2022
35318044	Shared signatures and divergence in skin microbiomes of children with atopic dermatitis and their caregivers.	Journal of Allergy and Clinical Immunology	2022
34495960	BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data.	PLoS Computational Biology	2021
33862216	Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners.	International Journal of Infectious Diseases	2021
33632307	Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn's disease.	Gut Pathog	2021
34000002	TUGDA: task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings.	Bioinformatics	2021
34039264	Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.	BMC Genomics	2021
33655229	COVID-19 drug practices risk antimicrobial resistance evolution.	Lancet Microbe	2021
34347523	Extended-Spectrum Î²-Lactamase-Producing and -Positive Escherichia coli from the Gut Microbiota of Healthy Singaporeans.	Applied and Environmental Microbiology	2021
33758416	Publisher Correction: Determination of isoform-specific RNA structure with nanopore long reads.	Nature Biotechnology	2021
33184479	Author Correction: Determination of isoform-specific RNA structure with nanopore long reads.	Nature Biotechnology	2021
33417711	Household transmission of carbapenemase-producing Enterobacteriaceae: a prospective cohort study.	Journal of Antimicrobial Chemotherapy	2021
33106685	Determination of isoform-specific RNA structure with nanopore long reads.	Nature Biotechnology	2021
34915921	Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures.	Genome Med	2021
34970567	CalmBelt: Rapid SARS-CoV-2 Genome Characterization for Outbreak Tracking.	Front Med (Lausanne)	2021
32853333	Emergence of tigecycline- and eravacycline-resistant Tet(X4)-producing Enterobacteriaceae in the gut microbiota of healthy Singaporeans.	Journal of Antimicrobial Chemotherapy	2020
32025243	Gut microbiota changes in children with autism spectrum disorder: a systematic review.	Gut Pathogens	2020
33205061	Human Tumor-Infiltrating MAIT Cells Display Hallmarks of Bacterial Antigen Recognition in Colorectal Cancer.	Cell Rep Med	2020
32818397	Duration of Carbapenemase-Producing Enterobacteriaceae Carriage in Hospital Patients.	Emerging Infectious Diseases	2020
32632261	Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut.	Nature Ecology and Evolution	2020
31426802	Development and application of a transcriptional sensor for detection of heterologous acrylic acid production in E. coli.	Microbial Cell Factories	2019
31697678	Boosting natural history research via metagenomic clean-up of crowdsourced feces.	PLoS Biology	2019
30926818	Structure mapping of dengue and Zika viruses reveals functional long-range interactions.	Nat Commun	2019
31439018	An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data.	Microbiome	2019
29599443	Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes.	Nature Communications	2018
28646502	The liver-gut microbiota axis modulates hepatotoxicity of tacrine in the rat.	Hepatology	2018
29880655	Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study.	European Respiratory Journal	2018
30497517	Understanding the microbial basis of body odor in pre-pubescent children and teenagers.	Microbiome	2018
30206721	A Novel Method of Segmentation and Classification for Meditation in Health Care Systems.	Journal of Medical Systems	2018
29868820	Predicting Cancer Drug Response using a Recommender System.	Bioinformatics	2018
30096302	Comprehensive Characterization of Cancer Driver Genes and Mutations.	Cell	2018
29673082	A MinIONâ¿¢-based pipeline for fast and cost-effective DNA barcoding.	Molecular Ecology Resources	2018
29625053	Comprehensive Characterization of Cancer Driver Genes and Mutations.	Cell	2018
29625049	Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.	Cell	2018
29259006	ConsensusDriver Improves upon Individual Algorithms for Predicting Driver Alterations in Different Cancer Types and Individual Patients.	Cancer Res	2018
28100585	Fast and accurate de novo genome assembly from long uncorrected reads.	Genome Research	2017
28991254	The draft genome of tropical fruit durian (Durio zibethinus).	Nature Genetics	2017