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| 38042165 | Approaches and challenges to inferring the geographical source of infectious disease outbreaks using genomic data. | Lancet Microbe | 2024 |
| 38078770 | Comparative evolution of influenza A virus H1 and H3 head and stalk domains across host species. | mBio | 2024 |
| 35952703 | Respiratory syncytial virus prevention within reach: the vaccine and monoclonal antibody landscape. | Lancet Infect Dis | 2023 |
| 37917680 | APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016. | Science | 2023 |
| 37561168 | Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae. | Arch Virol | 2023 |
| 37711483 | Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype. | Virus Evol | 2023 |
| 37905838 | Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus. | J Virol | 2023 |
| 37856430 | Dispersal history and bidirectional human-fish host switching of invasive, hypervirulent Streptococcus agalactiae sequence type 283. | PLOS Glob Public Health | 2023 |
| 37523582 | Lethal Respiratory Syncytial Virus in Zambia Is Sensitive to Long-acting Monoclonal Antibodies. | Pediatr Infect Dis J | 2023 |
| 37950885 | Shrinkage-based Random Local Clocks with Scalable Inference. | Mol Biol Evol | 2023 |
| 37745602 | Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic. | bioRxiv | 2023 |
| 37515095 | High-Level Drug-Resistant Mutations among HIV-1 Subtype A6 and CRF02_AG in Kazakhstan. | Viruses | 2023 |
| 37577709 | Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic. | medRxiv | 2023 |
| 37502985 | The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. | bioRxiv | 2023 |
| 37502973 | The genetic diversity of Nipah virus across spatial scales. | medRxiv | 2023 |
| 37540190 | Uncovering the endemic circulation of rabies in Cambodia. | Mol Ecol | 2023 |
| 37680469 | Molecular evolution and targeted recombination of SARS-CoV-2 in South Korea. | iScience | 2023 |
| 37640694 | Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. | Nat Commun | 2023 |
| 37639445 | Accelerating Bayesian inference of dependency between mixed-type biological traits. | PLoS Comput Biol | 2023 |
| 37458991 | Scalable Bayesian Divergence Time Estimation With Ratio Transformations. | Syst Biol | 2023 |
| 37425679 | The evolutionary history of hepaciviruses. | bioRxiv | 2023 |
| 36993291 | Parasite hybridization promotes spreading of endosymbiotic viruses. | bioRxiv | 2023 |
| 36945693 | Many-core algorithms for high-dimensional gradients on phylogenetic trees. | ArXiv | 2023 |
| 37379776 | Reconstruction of SARS-CoV-2 outbreaks in a primary school using epidemiological and genomic data. | Epidemics | 2023 |
| 37376536 | Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas. | Viruses | 2023 |
| 37071654 | Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City - from Alpha to Omicron. | PLoS Pathog | 2023 |
| 37229191 | Influenza A viruses in gulls in landfills and freshwater habitats in Minnesota, United States. | Front Genet | 2023 |
| 37471538 | Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. | Science | 2023 |
| 36994154 | Random-effects substitution models for phylogenetics via scalable gradient approximations. | ArXiv | 2023 |
| 36475767 | Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China. | J Virol | 2023 |
| 36692362 | Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019. | Emerg Infect Dis | 2023 |
| 36824718 | Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. | Res Sq | 2023 |
| 34543489 | A systematic review on global RSV genetic data: Identification of knowledge gaps. | Rev Med Virol | 2022 |
| 35584153 | Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019. | PLoS Negl Trop Dis | 2022 |
| 35476597 | Global spatial dynamics and vaccine-induced fitness changes of <i>Bordetella pertussis</i>. | Sci Transl Med | 2022 |
| 35767445 | Detection of Marburg Virus Disease in Guinea. | N Engl J Med | 2022 |
| 35835884 | Author Correction: Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals. | Nat Med | 2022 |
| 35538260 | Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals. | Nat Med | 2022 |
| 35538057 | Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic. | Nat Commun | 2022 |
| 35795297 | Accommodating sampling location uncertainty in continuous phylogeography. | Virus Evol | 2022 |
| 35698660 | The phylodynamics of SARS-CoV-2 during 2020 in Finland. | Commun Med (Lond) | 2022 |
| 35396471 | Unlocking capacities of genomics for the COVID-19 response and future pandemics. | Nat Methods | 2022 |
| 35632715 | The International Virus Bioinformatics Meeting 2022. | Viruses | 2022 |
| 35356640 | Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study. | Virus Evol | 2022 |
| 35712523 | Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1. | Virus Evol | 2022 |
| 36962341 | The role of high-risk geographies in the perpetuation of the HIV epidemic in rural South Africa: A spatial molecular epidemiology study. | PLOS Glob Public Health | 2022 |
| 36908682 | Principled, practical, flexible, fast: a new approach to phylogenetic factor analysis. | Methods Ecol Evol | 2022 |
| 36680148 | Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern. | Viruses | 2022 |
| 36333374 | Updated vaccine protects against SARS-CoV-2 variants including Omicron (B.1.1.529) and prevents transmission in hamsters. | Nat Commun | 2022 |
| 36063436 | Endogenous Viral Elements in Shrew Genomes Provide Insights into Pestivirus Ancient History. | Mol Biol Evol | 2022 |