Author details

Full Name

Andreas R Pfenning

Affiliation

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37104599	Evolutionary constraint and innovation across hundreds of placental mammals.	Science	2023
37770578	Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes.		2023
37205475	Integrative multi-dimensional characterization of striatal projection neuron heterogeneity in adult brain.		2023
36638792	Loss of epigenetic information as a cause of mammalian aging.	Cell	2023
36683855	Cell type-specific histone acetylation profiling of Alzheimer's disease subjects and integration with genetics.	Front Mol Neurosci	2023
37104615	Relating enhancer genetic variation across mammals to complex phenotypes using machine learning.		2023
35347109	Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder.	Transl Psychiatry	2022
36170369	Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.	Sci Adv	2022
35576146	Machine learning sequence prioritization for cell type-specific enhancer design.	eLife	2022
35410163	Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin.	BMC Genomics	2022
34942352	Chromatin accessibility and microRNA expression in nephron progenitor cells during kidney development.	Genomics	2022
34380600	Transcriptional Alterations in Dorsolateral Prefrontal Cortex and Nucleus Accumbens Implicate Neuroinflammation and Synaptic Remodeling in Opioid Use Disorder.	Biol Psychiatry	2021
34462306	Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology.	Journal of Neuroscience	2021
34618556	Population-specific neuromodulation prolongs therapeutic benefits of deep brain stimulation.	Science	2021
34727523	Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum.	Current Biology	2021
34664552	scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution.	Elife	2021
32511356	Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates.	bioRxiv	2020
32407523	HALPER facilitates the identification of regulatory element orthologs across species.		2020
32826334	Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates.	Proc Natl Acad Sci U S A	2020
33188066	Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice.	Journal of Neuroscience	2020
31133613	Rate of brain aging and <i>APOE Îµ4</i> are synergistic risk factors for Alzheimer's disease.	Life Sci Alliance	2019
31600518	A Modular Approach to Vocal Learning: Disentangling the Diversity of a Complex Behavioral Trait.	Neuron	2019
30559478	Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains.	Nat Neurosci	2019
27822342	Characterization and genetic manipulation of primed stem cells into a functional naÃ¯ve state with .	World Journal of Stem Cells	2016
26826701	The transcription factor calcium-response factor limits NMDA receptor-dependent transcription in the developing brain.	Journal of Neurochemistry	2016
27311442	High-throughput functional comparison of promoter and enhancer activities.	Genome Research	2016
26052046	Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.	Cell	2015
25693563	Integrative analysis of 111 reference human epigenomes.	Nature	2015
25693568	Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease.	Nature	2015
25504712	Comparative genomics reveals insights into avian genome evolution and adaptation.	Science	2014
25504733	Convergent transcriptional specializations in the brains of humans and song-learning birds.	Science	2014
25504732	Core and region-enriched networks of behaviorally regulated genes and the singing genome.	Science	2014
23818122	Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.	Journal of Comparative Neurology	2013
23818174	Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.	Journal of Comparative Neurology	2013
21746918	Relation of addiction genes to hypothalamic gene changes subserving genesis and gratification of a classic instinct, sodium appetite.	Proceedings of the National Academy of Sciences of the United States of America	2011
20360741	The genome of a songbird.	Nature	2010
20523734	Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways.	PLoS ONE	2010
17355637	A comparative genomics approach to identifying the plasticity transcriptome.	BMC Neuroscience	2007