Skip to Main Content

Author Details

Kun Qu
University of Science and Technology of China
2005
106
45
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36696508Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution.Sci Adv2023
37613592Structures, Distributions, and Conformations of SARS-CoV-2 Spike Proteins on Intact Virions by Cryo-EM and Cryo-ET.Microsc Microanal2023
37308475Single-cell landscape of primary central nervous system diffuse large B-cell lymphoma.Cell Discov2023
37429639Lsd1 safeguards T-cell development via suppressing endogenous retroelements and interferon responses.Life Sci Alliance2023
35217990Genome-wide CRISPR screen identifies synthetic lethality between DOCK1 inhibition and metformin in liver cancer.Protein Cell2022
35348580Ly49E separates liver ILC1s into embryo-derived and postnatal subsets with different functions.J Exp Med2022
35577954Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution.Nat Methods2022
35501841Single-cell transcriptomics reveal a unique memory-like NK cell subset that accumulates with ageing and correlates with disease severity in COVID-19.Genome Med2022
35758882A transcriptome atlas and interactive analysis platform for autoimmune disease.Database (Oxford)2022
35461164Metabolomics study on liver of db/db mice treated with curcumin using UPLC-Q-TOF-MS.J Pharm Biomed Anal2022
35486718FCHO controls AP2's initiating role in endocytosis through a PtdIns(4,5)P<sub>2</sub>-dependent switch.Sci Adv2022
36468689A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0.Elife2022
35992841Clinical application of parathyroid autotransplantation in endoscopic radical resection of thyroid carcinoma.Front Oncol2022
36351407Single-cell transcriptome profiling and chromatin accessibility reveal an exhausted regulatory CD4+ T cell subset in systemic lupus erythematosus.Cell Rep2022
35944541Melanopsin retinal ganglion cells mediate light-promoted brain development.Cell2022
36317875Single-Cell Heterogeneity of the Liver-Infiltrating Lymphocytes in Individuals with Chronic Echinococcus multilocularis Infection.Infect Immun2022
36151403SARS-CoV-2 Delta and Omicron variants evade population antibody response by mutations in a single spike epitope.Nat Microbiol2022
33390590Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss.Cell Discov2021
33771202Development of double-positive thymocytes at single-cell resolution.Genome Med2021
33787873Single-cell data clustering based on sparse optimization and low-rank matrix factorization.G3 (Bethesda)2021
33863328Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis.BMC Biol2021
33834202WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition.Brief Bioinform2021
33657410COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.Cell2021
34587478Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes.Cell Rep2021
34491790Single-Cell RNA Sequencing Reveals the Heterogeneity of Infiltrating Immune Cell Profiles in the Hepatic Cystic Echinococcosis Microenvironment.Infect Immun2021
34716308Chromatin accessibility analysis identifies the transcription factor ETV5 as a suppressor of adipose tissue macrophage activation in obesity.Cell Death Dis2021
34353956Maturation of the matrix and viral membrane of HIV-1.Science2021
32398051APEC: an accesson-based method for single-cell chromatin accessibility analysis.Genome Biol2020
32083182Chromatin accessibility analysis reveals regulatory dynamics of developing human retina and hiPSC-derived retinal organoids.Sci Adv2020
31804951A genome-wide long noncoding RNA CRISPRi screen identifies <i>PRANCR</i> as a novel regulator of epidermal homeostasis.Genome Res2020
32070491SMAtool reveals sequences and structural principles of protein-RNA interaction.Biochem Biophys Res Commun2020
33385611Landscape and Dynamics of the Transcriptional Regulatory Network During Natural Killer Cell Differentiation.Genomics Proteomics Bioinformatics2020
33203843Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.Nat Commun2020
33318485Author Correction: Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.Nat Commun2020
32805734Structures and distributions of SARS-CoV-2 spike proteins on intact virions.Nature2020
32764665Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.Nat Commun2020
32908308The native structure of the assembled matrix protein 1 of influenza A virus.Nature2020
32694775Myc-mediated SDHA acetylation triggers epigenetic regulation of gene expression and tumorigenesis.Nat Metab2020
30333377Polydatin Regulates the Apoptosis and Autophagy of Fibroblasts Obtained from Patients with Ankylosing Spondylitis.Biol Pharm Bull2019
31862000PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications.Genome Biol2019
29982337ATAC-pipe: general analysis of genome-wide chromatin accessibility.Brief Bioinform2019
31311791Accumulation of Tumor-Infiltrating CD49a<sup>+</sup> NK Cells Correlates with Poor Prognosis for Human Hepatocellular Carcinoma.Cancer Immunol Res2019
30809091Emodin induces apoptosis and autophagy of fibroblasts obtained from patient with ankylosing spondylitis.Drug Des Devel Ther2019
30709740Liver-Resident NK Cells Control Antiviral Activity of Hepatic T Cells via the PD-1-PD-L1 Axis.Immunity2019
30936078Correction: Reduced CD160 Expression Contributes to Impaired NK-cell Function and Poor Clinical Outcomes in Patients with HCC.Cancer Res2019
30628890The novel lncRNA <i>lnc-NR2F1</i> is pro-neurogenic and mutated in human neurodevelopmental disorders.Elife2019
30411378Human CD96 Correlates to Natural Killer Cell Exhaustion and Predicts the Prognosis of Human Hepatocellular Carcinoma.Hepatology2019
29600805Author Correction: Menin enhances c-Myc-mediated transcription to promote cancer progression.Nat Commun2018
30232222Reduced CD160 Expression Contributes to Impaired NK-cell Function and Poor Clinical Outcomes in Patients with HCC.Cancer Res2018
30478053Structure and architecture of immature and mature murine leukemia virus capsids.Proc Natl Acad Sci U S A2018
  • 1 - 50 of 106

Recommended Authors

Tao Wang
University of Texas Southwestern Medical Center
Career Start Year 2014
Number of shared co-authors 0
Hailiang Mei
Leiden University Medical Center
Career Start Year 2014
Number of shared co-authors 0
Venkat S Malladi
UT Southwestern Medical Center
Career Start Year 2008
Number of shared co-authors 6
Dejian Zhao
Yale School of Medicine
Career Start Year 2008
Number of shared co-authors 0
Jonathan E Bard
University at Buffalo
Career Start Year 2007
Number of shared co-authors 0
Matthias Farlik
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2007
Number of shared co-authors 0
Joshua W K Ho
The University of Hong Kong
Career Start Year 2006
Number of shared co-authors 0
Yue Lu
The University of Texas MD Anderson Cancer Center
Career Start Year 2006
Number of shared co-authors 0
Rahul Satija
Center for Genomics and Systems Biology, New York University
Career Start Year 2006
Number of shared co-authors 4
Altuna Akalin
Berlin Institute for Medical Systems Biology
Career Start Year 2006
Number of shared co-authors 1
Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2005
Number of shared co-authors 2
Maggie Cam
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Career Start Year 2005
Number of shared co-authors 0
Shyam Prabhakar
Genome Institute of Singapore (GIS)
Career Start Year 2004
Number of shared co-authors 2
Ido Amit
Weizmann Institute of Science
Career Start Year 2004
Number of shared co-authors 6
Christopher Benner
Michigan State University College of Human Medicine
Career Start Year 2004
Number of shared co-authors 2
Zhandong Liu
Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital
Career Start Year 2003
Number of shared co-authors 1
Shintaro Katayama
Folkhalsan Research Center
Career Start Year 2003
Number of shared co-authors 1
Andrew V Kossenkov
The Wistar Institute
Career Start Year 2003
Number of shared co-authors 1
Olivier Elemento
Meyer Cancer Center
Career Start Year 2002
Number of shared co-authors 5
Hans-J??rg Warnatz
Max Planck Institute for Molecular Genetics
Career Start Year 2002
Number of shared co-authors 3
Mikhail G Dozmorov
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 0
David K Crossman
University of Alabama at Birmingham
Career Start Year 2000
Number of shared co-authors 0
Stefan Bekiranov
University of Virginia
Career Start Year 2000
Number of shared co-authors 0
Sven Heinz
U.C. San Diego School of Medicine
Career Start Year 2000
Number of shared co-authors 1
Guo-Cheng Yuan
Dana-Farber Cancer Institute, Harvard School of Public Health
Career Start Year 2000
Number of shared co-authors 0
Kai Tan
University of Pennsylvania
Career Start Year 1999
Number of shared co-authors 1
Martin Hirst
University of British Columbia
Career Start Year 1998
Number of shared co-authors 5
Sheng Zhong
Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University
Career Start Year 1994
Number of shared co-authors 2
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Career Start Year 1994
Number of shared co-authors 1
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Career Start Year 1984
Number of shared co-authors 1

Collaborators

Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 37
Ryan A Flynn
Boston Children's Hospital
Co-authored papers 9
Paul G Giresi
Center for Personal Dynamic Regulomes
Co-authored papers 4
Eran Segal
Weizmann Institute of Science
Co-authored papers 3
Ansuman T Satpathy
Stanford University
Co-authored papers 3
Seung K Kim
Stanford University School of Medicine
Co-authored papers 3
Sjors H W Scheres
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 3
Tian Xue
Co-authored papers 2
Jeffrey M Granja
Stanford University School of Medicine
Co-authored papers 2
Stephen R Quake
Stanford University
Co-authored papers 2
Bo Wen
Co-authored papers 2
Pei Wang
Co-authored papers 2
John L Rinn
Co-authored papers 2
William J Greenleaf
Stanford University
Co-authored papers 2
Michael Snyder
Stanford University
Co-authored papers 2
Brian T Do
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
Eric T Kool
Co-authored papers 2
H Efsun Arda
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 2
Bryan K Sun
University of California San Diego
Co-authored papers 2
Anton Nekrutenko
The Pennsylvania State University, University Park
Co-authored papers 1
Richard O Chen
Stanford University
Co-authored papers 1
Alan Rein
Co-authored papers 1
Ying Shen
Center for Personal Dynamic Regulomes, Stanford University School of Medicine
Co-authored papers 1
Anthony E Oro
Stanford University
Co-authored papers 1
Benoit Molinie
Co-authored papers 1
Cecil M Benitez
university of california los angeles Jonsson Comprehensive Cancer Center.
Co-authored papers 1
James T Robinson
University of California San Diego
Co-authored papers 1
Peter Sarnow
Stanford University School of Medicine
Co-authored papers 1
Tim Hull
University of California
Co-authored papers 1
Colin C Collins
University of British Columbia
Co-authored papers 1
Release 1.2