Author details

Full Name

Wen-Lian Hsu

Affiliation

Institute of Information Science

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33331647	LBERT: Lexically-aware Transformers based Bidirectional Encoder Representation model for learning Universal Bio-Entity Relations.	Bioinformatics	2021
34330209	Co-AMPpred for in silico-aided predictions of antimicrobial peptides by integrating composition-based features.	BMC Bioinformatics	2021
33331647	LBERT: Lexically-aware Transformers based Bidirectional Encoder Representation model for learning Universal Bio-Entity Relations.	Bioinformatics	2021
34330209	Co-AMPpred for in silico-aided predictions of antimicrobial peptides by integrating composition-based features.	BMC Bioinformatics	2021
31454239	Programmable One-Pot Synthesis of Oligosaccharides.	Biochemistry	2020
31647101	miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.	Nucleic Acids Res	2020
32093618	GSAlign: an efficient sequence alignment tool for intra-species genomes.	BMC Genomics	2020
32602538	Biomedical named entity recognition and linking datasets: survey and our recent development.	Brief Bioinform	2020
31454239	Programmable One-Pot Synthesis of Oligosaccharides.	Biochemistry	2020
31647101	miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.	Nucleic Acids Res	2020
32093618	GSAlign: an efficient sequence alignment tool for intra-species genomes.	BMC Genomics	2020
32602538	Biomedical named entity recognition and linking datasets: survey and our recent development.	Brief Bioinform	2020
30809637	Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature.	Database (Oxford)	2019
31685900	N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.	Sci Rep	2019
30809637	Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature.	Database (Oxford)	2019
31390470	Medical knowledge infused convolutional neural networks for cohort selection in clinical trials.	J Am Med Inform Assoc	2019
31305071	WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline.	Anal Chem	2019
31545316	Hierarchical and Programmable One-Pot Oligosaccharide Synthesis.	J Vis Exp	2019
31685900	N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.	Sci Rep	2019
31545316	Hierarchical and Programmable One-Pot Oligosaccharide Synthesis.	J Vis Exp	2019
31305071	WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline.	Anal Chem	2019
31390470	Medical knowledge infused convolutional neural networks for cohort selection in clinical trials.	J Am Med Inform Assoc	2019
29126174	miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.	Nucleic Acids Res	2018
28968831	DART: a fast and accurate RNA-seq mapper with a partitioning strategy.	Bioinformatics	2018
30560325	Statistical principle-based approach for gene and protein related object recognition.	J Cheminform	2018
30346607	LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task.	Database (Oxford)	2018
30523255	Hierarchical and programmable one-pot synthesis of oligosaccharides.	Nat Commun	2018
29126174	miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.	Nucleic Acids Res	2018
30523255	Hierarchical and programmable one-pot synthesis of oligosaccharides.	Nat Commun	2018
30346607	LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task.	Database (Oxford)	2018
30560325	Statistical principle-based approach for gene and protein related object recognition.	J Cheminform	2018
28968831	DART: a fast and accurate RNA-seq mapper with a partitioning strategy.	Bioinformatics	2018
29165996	iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.	Anal Chem	2017
31725857	Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy.	Database (Oxford)	2017
28379292	Kart: a divide-and-conquer algorithm for NGS read alignment.	Bioinformatics	2017
29165996	iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.	Anal Chem	2017
31725857	Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy.	Database (Oxford)	2017
28379292	Kart: a divide-and-conquer algorithm for NGS read alignment.	Bioinformatics	2017
26784691	iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination.	PLoS One	2016
27242035	MET network in PubMed: a text-mined network visualization and curation system.	Database (Oxford)	2016
26784691	iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination.	PLoS One	2016
27084943	MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification.	Nucleic Acids Res	2016
26590260	miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database.	Nucleic Acids Res	2016
27524807	PIPE: a protein-protein interaction passage extraction module for BioCreative challenge.	Database (Oxford)	2016
27604469	An expanded evaluation of protein function prediction methods shows an improvement in accuracy.	Genome Biol	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
26590260	miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database.	Nucleic Acids Res	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
27604469	An expanded evaluation of protein function prediction methods shows an improvement in accuracy.	Genome Biol	2016
27242035	MET network in PubMed: a text-mined network visualization and curation system.	Database (Oxford)	2016

1 - 50 of 172

Chen Li

Biomedicine Discovery Institute, Monash University

Career Start Year 2015

Number of shared co-authors 0

Wei Zheng

University of Michigan ann arbor

Career Start Year 2013

Number of shared co-authors 2

Ke Liu

Xiamen University

Career Start Year 2008

Number of shared co-authors 0

Sheng Wang

University of Texas at Arlington

Career Start Year 2008

Number of shared co-authors 0

Xin Gao

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2007

Number of shared co-authors 4

Jaewoo Kang

Korea University

Career Start Year 2006

Number of shared co-authors 0

Shanfeng Zhu

Shanghai Qi Zhi Institute

Career Start Year 2005

Number of shared co-authors 67

Sudipto Saha

Bose Institute

Career Start Year 2005

Number of shared co-authors 1

Jeyakumar Natarajan

Bharathiar University

Career Start Year 2005

Number of shared co-authors 6

Fang-Xiang Wu

University of Saskatchewan

Career Start Year 2004

Number of shared co-authors 0

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 1

Jiangning Song

Monash Data Futures Institute, Monash University

Career Start Year 2004

Number of shared co-authors 0

Doheon Lee

Korea Advanced Institute of Science and Technology

Career Start Year 2004

Number of shared co-authors 1

Mohammed J Zaki

Rensselaer Polytechnic Institute

Career Start Year 2003

Number of shared co-authors 0

Dong Li

Anhui Medical University

Career Start Year 2003

Number of shared co-authors 3

George Karypis

University of Minnesota

Career Start Year 2003

Number of shared co-authors 0

Dongsup Kim

Korea Advanced Institute of Science and Technology

Career Start Year 2003

Number of shared co-authors 0

Dmitry Korkin

Worcester Polytechnic Institute

Career Start Year 2002

Number of shared co-authors 1

Hagit Shatkay

University of Delaware

Career Start Year 2000

Number of shared co-authors 50

Volkan Atalay

Middle East Technical University

Career Start Year 1999

Number of shared co-authors 66

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 16

Dong Xu

University of Missouri

Career Start Year 1998

Number of shared co-authors 4

Kalpana Raja

Morgridge Institute for Research

Career Start Year 1997

Number of shared co-authors 5

Jung-Hsien Chiang

National Cheng Kung University

Career Start Year 1997

Number of shared co-authors 2

Kentaro Tomii

National Institute of Advanced Industrial Science and Technology (AIST)

Career Start Year 1996

Number of shared co-authors 2

Hiroshi Mamitsuka

Institute for Chemical Research, Kyoto University

Career Start Year 1994

Number of shared co-authors 0

Tao Jiang

University of California riverside

Career Start Year 1992

Number of shared co-authors 0

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 10

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 16

row(s) 1 - 30 of 30

Ting-Yi Sung

School of Pharmacy, College of Medicine, National Taiwan University

Co-authored papers 43

Hong-Jie Dai

Co-authored papers 17

Richard Tzong-Han Tsai

Co-authored papers 15

Ching-Tai Chen

Asia University

Co-authored papers 13

Yu-Ju Chen

Institute of Chemistry

Co-authored papers 12

Chia-Yi Su

Co-authored papers 8

Jia-Ming Chang

College of Life Sciences, Xuzhou Medical University

Co-authored papers 8

Yung-Chun Chang

Co-authored papers 6

Chia-Feng Tsai

Pacific Northwest National Laboratory

Co-authored papers 5

Hui-Yin Chang

Co-authored papers 5

Yi-Ting Wang

McGill Research Centre for Studies in Aging

Co-authored papers 4

Jitendra Jonnagaddala

NMC Royal Hospital

Co-authored papers 4

Onkar Singh

Co-authored papers 3

Hsin-Yi Wu

Co-authored papers 3

Hsien-Da Huang

Co-authored papers 3

Chien Chin Chen

Co-authored papers 2

Yu-Chen Su

Co-authored papers 2

Shabbir Syed-Abdul

Graduate Institute of Biomedical Informatics, Taipei Medical University

Co-authored papers 2

Chun-Han Chu

Co-authored papers 2

Christopher Funk

University of Colorado School of Medicine

Co-authored papers 1

Kai Hakala

University of Turku

Co-authored papers 1

Domenico Cozzetto

Imperial College London

Co-authored papers 1

Amos Stern

Life Science Institute

Co-authored papers 1

Shanshan Zhang

Temple University

Co-authored papers 1

Rezarta Islamaj DoÄ¿an

Co-authored papers 1

Marina Marcet-Houben

Institute for Research in Biomedicine (IRB)

Co-authored papers 1

Hans J Vogel

University of Calgary

Co-authored papers 1

Dongseop Kwon

Co-authored papers 1

Pooya Zakeri

Aarhus University

Co-authored papers 1

Alfredo Benso

Italy Consorzio Interuniversitario Nazionale per l'Informatica

Co-authored papers 1

1 - 30

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