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Author Details

Matthew Berriman
Wellcome Sanger Institute
1998
271
87
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37402863Author Correction: Cyclin-dependent kinase 12 is a drug target for visceral leishmaniasis.Nature2023
37669291A drug repurposing screen for whipworms informed by comparative genomics.PLoS Negl Trop Dis2023
37487539The Human Blood Fluke, Schistosoma mansoni, Harbors Bacteria Throughout the Parasite's Life Cycle.J Infect Dis2023
37935722The stage- and sex-specific transcriptome of the human parasite Schistosoma mansoni.Sci Data2023
37024784Correction: A manually curated annotation characterises genomic features of P. falciparum lncRNAs.BMC Genomics2023
37242601Using ChEMBL to Complement Schistosome Drug Discovery.Pharmaceutics2023
32524140Screening of a Library of Recombinant Schistosoma mansoni Proteins With Sera From Murine and Human Controlled Infections Identifies Early Serological Markers.J Infect Dis2022
35610562Characterising genome architectures using genome decomposition analysis.BMC Genomics2022
35608628Geographic Origin and Vertical Transmission of Leishmania infantum Parasites in Hunting Hounds, United States.Emerg Infect Dis2022
35794092Population genomics of ancient and modern Trichuris trichiura.Nat Commun2022
35666710Correction: MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni.PLoS Negl Trop Dis2022
35365634Defining the early stages of intestinal colonisation by whipworms.Nat Commun2022
36451097A manually curated annotation characterises genomic features of P. falciparum lncRNAs.BMC Genomics2022
36003342Identification of anti-schistosomal, anthelmintic and anti-parasitic compounds curated and text-mined from the scientific literature.Wellcome Open Res2022
36279280The gut microbial metabolic capacity of microbiome-humanized vs. wild type rodents reveals a likely dual role of intestinal bacteria in hepato-intestinal schistosomiasis.PLoS Negl Trop Dis2022
35939508Genomic evidence of contemporary hybridization between Schistosoma species.PLoS Pathog2022
36229520Schistosomes go single cell.Nat Rev Microbiol2022
36261007Genomic landscape of drug response reveals mediators of anthelmintic resistance.Cell Rep2022
35981002Genome-wide analysis of Schistosoma mansoni reveals limited population structure and possible praziquantel drug selection pressure within Ugandan hot-spot communities.PLoS Negl Trop Dis2022
35012338Genomic and Phenotypic Characterization of Experimentally Selected Resistant Leishmania donovani Reveals a Role for Dynamin-1-Like Protein in the Mechanism of Resistance to a Novel Antileishmanial Compound.mBio2022
35134929WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.Genetics2022
34764149Long-read assembly and comparative evidence-based reanalysis of <i>Cryptosporidium</i> genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions.Genome Res2022
34538735Hatching of parasitic nematode eggs: a crucial step determining infection.Trends Parasitol2022
33120115Schistosoma mansoni Eggs Modulate the Timing of Granuloma Formation to Promote Transmission.Cell Host Microbe2021
36389622The Transcriptome of <i>Schistosoma mansoni</i> Developing Eggs Reveals Key Mediators in Pathogenesis and Life Cycle Propagation.Front Trop Dis2021
33648633Mapping immune variation and <i>var</i> gene switching in naive hosts infected with <i>Plasmodium falciparum</i>.Elife2021
33750964Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro.PLoS Negl Trop Dis2021
34941866Morphological and genomic characterisation of the Schistosoma hybrid infecting humans in Europe reveals admixture between Schistosoma haematobium and Schistosoma bovis.PLoS Negl Trop Dis2021
34703904The complete genome sequence of <i>Eimeria tenella</i> (Tyzzer 1929), a common gut parasite of chickens.Wellcome Open Res2021
34404952An uneven race: genome editing for parasitic worms.Nat Rev Microbiol2021
34362894Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration.Nat Commun2021
34003838Mapping Rora expression in resting and activated CD4+ T cells.PLoS One2021
33465071Tumor Necrosis Factor and Schistosoma mansoni egg antigen omega-1 shape distinct aspects of the early egg-induced granulomatous response.PLoS Negl Trop Dis2021
30852586An Experimental Human Blood-Stage Model for Studying Plasmodium malariae Infection.J Infect Dis2020
31791691Organoids - New Models for Host-Helminth Interactions.Trends Parasitol2020
33253209Extracellular non-coding RNA signatures of the metacestode stage of Echinococcus multilocularis.PLoS Negl Trop Dis2020
33253172Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis.PLoS Negl Trop Dis2020
33168940Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm.Commun Biol2020
33339816Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni.Nat Commun2020
33167983Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection.BMC Biol2020
33028892Analysis of Plasmodium vivax schizont transcriptomes from field isolates reveals heterogeneity of expression of genes involved in host-parasite interactions.Sci Rep2020
33329584Baseline Gut Microbiota Composition Is Associated With <i>Schistosoma mansoni</i> Infection Burden in Rodent Models.Front Immunol2020
32973031Large-scale RNAi screening uncovers therapeutic targets in the parasite <i>Schistosoma mansoni</i>.Science2020
32745123Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys.PLoS Pathog2020
32659277Development of caecaloids to study host-pathogen interactions: new insights into immunoregulatory functions of Trichuris muris extracellular vesicles in the caecum.Int J Parasitol2020
32796922Author Correction: Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria.Nat Microbiol2020
32958676Ecological divergence and hybridization of Neotropical <i>Leishmania</i> parasites.Proc Natl Acad Sci U S A2020
32929126Evaluation of whole genome amplification and bioinformatic methods for the characterization of Leishmania genomes at a single cell level.Sci Rep2020
32310945Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani.PLoS Negl Trop Dis2020
32527783Nearly Complete Genome Sequence of Brugia malayi Strain FR3.Microbiol Resour Announc2020
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Collaborators

Nancy Holroyd
Co-authored papers 38
Chris I Newbold
Wellcome Trust Sanger Institute
Co-authored papers 32
Christiane Hertz-Fowler
Institute of Integrative Biology, University of Liverpool
Co-authored papers 29
Neil Hall
Earlham Institute
Co-authored papers 25
Arnab Pain
King Abdullah University of Science and Technology
Co-authored papers 25
Bart Barrell
Wellcome Trust Sanger Institute
Co-authored papers 21
Martin Aslett
The Wellcome Trust Sanger Institute
Co-authored papers 18
Alasdair Ivens
University of Washington School of Medicine
Co-authored papers 16
David S Roos
University of Pennsylvania
Co-authored papers 12
Alan H Fairlamb
University of Dundee
Co-authored papers 12
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 10
Alejandro Sanchez-Flores
Co-authored papers 8
Magdalena Zarowiecki
European Bioinformatics Institute
Co-authored papers 8
Kim Rutherford
University of Cambridge
Co-authored papers 8
Manu Vanaerschot
Columbia University Irving Medical Center
Co-authored papers 7
Paul W Sternberg
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Co-authored papers 7
Sue Kyes
Weatherall Institute of Molecular Medicine
Co-authored papers 6
Paul Kersey
European Bioinformatics Institute
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Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 6
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 6
Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 6
Lee Murphy
Edinburgh Clinical Research Facility, University of Edinburgh
Co-authored papers 6
Caroline Durrant
Co-authored papers 6
Ranjana Kishore
California Institute of Technology
Co-authored papers 6
Peter J Myler
University of Guelph
Co-authored papers 6
Ian T Paulsen
Macquarie University
Co-authored papers 5
James D Wasmuth
University of Calgary
Co-authored papers 5
Karen Yook
California Institute of Technology
Co-authored papers 5
Gary Saunders
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Juancarlos Chan
California Institute of Technology
Co-authored papers 5
Release 1.2