Author details

Full Name

Eric Jakobsson

Affiliation

ORCID

Career Start Year

1971

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35192365	High-Dimensional Parameter Search Method to Determine Force Field Mixing Terms in Molecular Simulations.	Langmuir	2022
34289903	ResidueFinder: extracting individual residue mentions from protein literature.	Journal of Biomedical Semantics	2021
32933310	Transferable interactions of Li and Mg ions in polarizable models.	Journal of Chemical Physics	2020
31337218	Interactions of Monovalent and Divalent Cations at Palmitoyl-Oleoyl-Phosphatidylcholine Interface.	Langmuir	2019
30443009	An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers.	Heredity	2019
30645595	Rationally designing antisense therapy to keep up with evolving bacterial resistance.	PLoS ONE	2019
31114752	Systems Biology Understanding of the Effects of Lithium on Cancer.	Frontiers in Oncology	2019
30618562	Systems Biology Understanding of the Effects of Lithium on Affective and Neurodegenerative Disorders.	Frontiers in Neuroscience	2018
28076953	Effects of Lithium and Other Monovalent Ions on Palmitoyl Oleoyl Phosphatidylcholine Bilayer.	Langmuir	2017
28316759	Fourier Analysis of Conservation Patterns in Protein Secondary Structure.	Computational and Structural Biotechnology Journal	2017
29127487	Towards a Unified Understanding of Lithium Action in Basic Biology and its Significance for Applied Biology.	Journal of Membrane Biology	2017
28287261	Three-Dimensional Encapsulation of Saccharomyces cerevisiae in Silicate Matrices Creates Distinct Metabolic States as Revealed by Gene Chip Analysis.	ACS Nano	2017
27359102	Conservation in Mammals of Genes Associated with Aggression-Related Behavioral Phenotypes in Honey Bees.	PLoS Comput Biol	2016
25607812	Nanoporous silica-based protocells at multiple scales for designs of life and nanomedicine.	Life	2015
25667984	Distinct mechanisms regulating mechanical force-induced CaÂ²âº signals at the plasma membrane and the ER in human MSCs.	eLife	2015
24460506	Automated optimization of water-water interaction parameters for a coarse-grained model.	Journal of Physical Chemistry B	2014
23336295	Building a knowledge-based statistical potential by capturing high-order inter-residue interactions and its applications in protein secondary structure assessment.	Journal of Chemical Information and Modeling	2013
24349035	Predicting protein-protein interaction by the mirrortree method: possibilities and limitations.	PLoS ONE	2013
21982866	Molecular dynamic simulation study of cholesterol and conjugated double bonds in lipid bilayers.	Chemistry and Physics of Lipids	2011
21320475	Conjugated double bonds in lipid bilayers: a molecular dynamics simulation study.	Chemistry and Physics of Lipids	2011
21918370	Identifying bacterial and archaeal homologs of pentameric ligand-gated ion channel (pLGIC) family using domain-based and alignment-based approaches.	Channels	2011
21702492	Sampling multiple scoring functions can improve protein loop structure prediction accuracy.	Journal of Chemical Information and Modeling	2011
20642859	Improving predicted protein loop structure ranking using a Pareto-optimality consensus method.	BMC Structural Biology	2010
26613312	A Coarse-Grained Model Based on Morse Potential for Water and n-Alkanes.	Journal of Chemical Theory and Computation	2010
20949136	Domain-based identification and analysis of glutamate receptor ion channels and their relatives in prokaryotes.	PLoS ONE	2010
20938493	SIMULATION OF ION CONDUCTION IN Î±-HEMOLYSIN NANOPORES WITH COVALENTLY ATTACHED Î²-CYCLODEXTRIN BASED ON BOLTZMANN TRANSPORT MONTE CARLO MODEL.	Journal of Computational and Theoretical Nanoscience	2010
20818181	Evolutionary coupling in the K(V)1.2-Î²â¿¿ complex.	Channels (Austin)	2010
20070091	Backbone statistical potential from local sequence-structure interactions in protein loops.	Journal of Physical Chemistry B	2010
20409466	A biophysical model for integration of electrical, osmotic, and pH regulation in the human bronchial epithelium.	Biophysical Journal	2010
20445807	Simulation of charge transport in ion channels and nanopores with anisotropic permittivity.	J Comput Electron	2009
19521530	Functional equivalency inferred from "authoritative sources" in networks of homologous proteins.	PLoS ONE	2009
19708111	An improved united atom force field for simulation of mixed lipid bilayers.	Journal of Physical Chemistry B	2009
18310251	End-point targeted molecular dynamics: large-scale conformational changes in potassium channels.	Biophys J	2008
18517226	Cholesterol packing around lipids with saturated and unsaturated chains: a simulation study.	Langmuir	2008
17085504	The cPLA2 C2alpha domain in solution: structure and dynamics of its Ca2+-activated and cation-free states.	Biophysical Journal	2007
17587873	Sodium channel auxiliary subunits.	Journal of Molecular Microbiology and Biotechnology	2007
17071661	Lateral organization in lipid-cholesterol mixed bilayers.	Biophysical Journal	2007
17071659	Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.	Biophysical Journal	2007
17114897	Calcium channel auxiliary subunits.	Journal of Molecular Microbiology and Biotechnology	2006
16183883	The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.	Biophysical Journal	2006
15734552	Digital biology: an emerging and promising discipline.	Trends in Biotechnology	2005
15642096	Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels.		2005
14747308	Ionization states of residues in OmpF and mutants: effects of dielectric constant and interactions between residues.	Biophysical Journal	2004
15610026	Ca2+ activation of the cPLA2 C2 domain: ordered binding of two Ca2+ ions with positive cooperativity.	Biochemistry	2004
15339797	Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine.	Biophysical Journal	2004
15298913	Sphingomyelin-cholesterol domains in phospholipid membranes: atomistic simulation.	Biophys J	2004
14645055	Structure of sphingomyelin bilayers: a simulation study.	Biophys J	2003
12867745	Phylogenetic analyses of potassium channel auxiliary subunits.	Journal of Molecular Microbiology and Biotechnology	2003
12719225	Sequence-function analysis of the K+-selective family of ion channels using a comprehensive alignment and the KcsA channel structure.	Biophys J	2003
12324406	Cholesterol-induced modifications in lipid bilayers: a simulation study.	Biophys J	2002