Author details

Full Name

Alexander Dobin

Affiliation

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37503119	The ENCODE Uniform Analysis Pipelines.	Res Sq	2023
37667001	Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution.	Nat Ecol Evol	2023
37922916	Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets.		2023
37639593	Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma.	Proc Natl Acad Sci U S A	2023
36711961	Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA-sequencing datasets.		2023
37323575	Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.	Cell Rep Methods	2023
37066421	The ENCODE Uniform Analysis Pipelines.	bioRxiv	2023
35256454	Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses.	Genome Res	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
35319013	Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2022
34616062	Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2021
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
32296450	Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.	Front Plant Sci	2020
32759341	A limited set of transcriptional programs define major cell types.	Genome Res	2020
31399121	Is it time to change the reference genome?	Genome Biol	2019
31645363	Dynamics of microRNA expression during mouse prenatal development.	Genome Res	2019
31639029	Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.	Genome Biol	2019
30918008	The long noncoding RNA <i>ROCKI</i> regulates inflammatory gene expression.	EMBO J	2019
29718481	The fractured landscape of RNA-seq alignment: the default in our STARs.	Nucleic Acids Res	2018
27716375	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27391956	Gene-specific patterns of expression variation across organs and species.	Genome Biol	2016
27107712	A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27215799	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27115637	Optimizing RNA-Seq Mapping with STAR.	Methods Mol Biol	2016
26334920	Mapping RNA-seq Reads with STAR.	Curr Protoc Bioinformatics	2015
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25413365	Comparison of the transcriptional landscapes between human and mouse tissues.	Proc Natl Acad Sci U S A	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
23104886	STAR: ultrafast universal RNA-seq aligner.	Bioinformatics	2013
22936248	High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.	Genome Res	2013
22238572	Evidence for transcript networks composed of chimeric RNAs in human cells.	PLoS One	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22955620	Landscape of transcription in human cells.	Nature	2012
22123973	Genome-wide antisense transcription drives mRNA processing in bacteria.	Proc Natl Acad Sci U S A	2011
21177962	The transcriptional diversity of 25 Drosophila cell lines.	Genome Res	2011
21179090	The developmental transcriptome of Drosophila melanogaster.	Nature	2011