Author details

Full Name

Benjamin P Bowen

Affiliation

ORCID

Career Start Year

2003

Papers

105

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37041326	Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past.		2023
37668195	Conservation of beneficial microbes between the rhizosphere and the cyanosphere.		2023
37596301	BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring.		2023
37401915	A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening.	Lab Chip	2023
36880270	Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change.	Plant J	2023
36702250	Mass spectrometry imaging-based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme.		2023
37312139	Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium.		2023
37307452	Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter.		2023
34845335	Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.	ISME J	2022
35523965	SIMILE enables alignment of tandem mass spectra with statistical significance.	Nat Commun	2022
36300927	Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil.	Applied and Environmental Microbiology	2022
35756023	Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies.	Frontiers in Microbiology	2022
35694313	A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.	Front Microbiol	2022
37938263	Protist impacts on marine cyanovirocell metabolism.	ISME Commun	2022
34862502	GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.	Nat Methods	2022
34360661	Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions.	Int J Mol Sci	2021
34017316	Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of <i>Thermoflexus hugenholtzii</i> and Three Candidate Species From China and Japan.	Front Microbiol	2021
33906945	Anaerobic gut fungi are an untapped reservoir of natural products.	Proc Natl Acad Sci U S A	2021
33881913	Metabolomic Patterns of Septoria Canker Resistant and Susceptible Genotypes 24 Hours Postinoculation.	Phytopathology	2021
33712730	A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.	Commun Biol	2021
34083602	A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities.	Sci Rep	2021
33431904	Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays).	Scientific Reports	2021
34795375	Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.	Commun Biol	2021
34399620	Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship.	mBio	2021
34726483	Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae.	mSystems	2021
30787178	Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga <i>Chromochloris zofingiensis</i>.	Plant Cell	2019
31570867	Cooking shapes the structure and function of the gut microbiome.	Nat Microbiol	2019
31616394	Taxonomic and Metabolic Incongruence in the Ancient Genus <i>Streptomyces</i>.	Front Microbiol	2019
31611640	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.	Nat Microbiol	2019
30585637	Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass.	New Phytologist	2019
31235780	Probing the active fraction of soil microbiomes using BONCAT-FACS.	Nat Commun	2019
30896917	MAGI: A Method for Metabolite Annotation and Gene Integration.	ACS Chemical Biology	2019
29546662	An integrated workflow for phenazine-modifying enzyme characterization.	J Ind Microbiol Biotechnol	2018
28866551	BASTet: Shareable and Reproducible Analysis and Visualization of Mass Spectrometry Imaging Data via OpenMSI.		2018
29930200	Deciphering microbial interactions in synthetic human gut microbiome communities.	Mol Syst Biol	2018
30063326	Insulator Nanostructure Desorption Ionization Mass Spectrometry.	Anal Chem	2018
30208844	Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes.	BMC Microbiol	2018
30252972	Towards measuring growth rates of pathogens during infections by D O-labeling lipidomics.	Rapid Communications in Mass Spectrometry	2018
30619134	Microbial Ecology on Solar Panels in Berkeley, CA, United States.	Frontiers in Microbiology	2018
29556109	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.	Nature Microbiology	2018
29296020	Linking soil biology and chemistry in biological soil crust using isolate exometabolomics.	Nature Communications	2018
28114881	Dynamic substrate preferences predict metabolic properties of a simple microbial consortium.	BMC Bioinformatics	2017
28467051	OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging.	Anal Chem	2017
28976938	Exometabolomic Analysis of Cross-Feeding Metabolites.	Metabolites	2017
28481340	Widespread adenine N6-methylation of active genes in fungi.	Nat Genet	2017
28520405	Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry.	Anal Chem	2017
29138306	Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, <i>Desulfovibrio vulgaris</i>.	mBio	2017
29087390	Role of adipocyte mitochondria in inflammation, lipemia and insulin sensitivity in humans: effects of pioglitazone treatment.	International Journal of Obesity	2017
28068058	Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (DO) Stable Isotope Probing.	ACS Chemical Biology	2017
27782150	A robust gene-stacking method utilizing yeast assembly for plant synthetic biology.	Nature Communications	2016