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Author Details

Katrina Kalantar
University of California-San Francisco School of Medicine.
2017
22
12
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36790168Antibodies to repeat-containing antigens in <i>Plasmodium falciparum</i> are exposure-dependent and short-lived in children in natural malaria infections.Elife2023
37790384The antibiotic resistance reservoir of the lung microbiome expands with age.Res Sq2023
37009900Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children.J Clin Invest2023
35238677Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system.Proc Natl Acad Sci U S A2022
35544096Pneumonia surveillance with culture-independent metatranscriptomics in HIV-positive adults in Uganda: a cross-sectional study.Lancet Microbe2022
35544065Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics.Lancet Microbe2022
35730550Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries.Glob Health Action2022
35818068Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.Genome Med2022
36266337Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults.Nat Microbiol2022
35066510Functional Transcriptomic Studies of Immune Responses and Endotoxin Tolerance in Early Human Sepsis.Shock2022
34402649Host-Microbe Metagenomics: a Lens To Refocus Our Perspective on Infectious and Inflammatory Diseases.mSystems2021
32511296Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia.bioRxiv2020
33057676IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.Gigascience2020
32351922Co-occurrence of <i>Campylobacter</i> Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host Microbiome.Front Public Health2020
30652494Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota.Am J Physiol Lung Cell Mol Physiol2019
30239621Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children.Clin Infect Dis2019
31211676Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers.Emerg Infect Dis2019
31220115Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda.PLoS One2019
28686513Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients.Am J Respir Crit Care Med2018
29991314Whole-Genome mRNA Gene Expression Differs Between Patients With and Without Delirium.J Geriatr Psychiatry Neurol2018
30482864Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults.Proc Natl Acad Sci U S A2018
28581474Extracorporeal life support survival in a pediatric hematopoietic cellular transplant recipient with presumed GvHD-related fulminant myocarditis.Bone Marrow Transplant2017
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Collaborators

Joseph L DeRisi
University of California San Francisco
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Carolyn S Calfee
University of California San Francisco
Co-authored papers 6
Alexandra Tsitsiklis
University of California san francisco
Co-authored papers 5
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Co-authored papers 5
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Co-authored papers 5
Michael A Matthay
Cardiovascular Research Institute, University of California san francisco
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Cristina M Tato
Institute of Immunity, Stanford University School of Medicine
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Michael R Wilson
Weill Institute for Neurosciences, University of California-San Francisco
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Steve Miller
University of CaliforniaSan Francisco
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University of California-San Francisco
Co-authored papers 3
Emily D Crawford
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Aleksandra Leligdowicz
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The Children's Hospital of Philadelphia, University of Pennsylvania
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Ivan Mwebaza
Case Western Reserve University School of Medicine
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Stephen L Isaacs
Robert Wood Johnson Foundation in Princeton
Co-authored papers 1
Katie A Lien
Pritzker School of Medicine, University of Chicago
Co-authored papers 1
Manu Vanaerschot
Columbia University Irving Medical Center
Co-authored papers 1
Marie E Steiner
University of Minnesota
Co-authored papers 1
Eric Lee
School of Public Health, University of California berkeley
Co-authored papers 1
Nadine Czudnochowski
University of California san francisco
Co-authored papers 1
Matt Knight
University of California berkeley
Co-authored papers 1
Isabelle Charles
Co-authored papers 1
Oren S Rosenberg
University of California san francisco
Co-authored papers 1
Arthur Reingold
University of California berkeley
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Release 1.2