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Author Details

Sergey Knyazev
David Geffen School of Medicine, University of California los angeles
2015
22
9
PMIDPaper TitleJournal TitlePublished Year
37198712Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.Genome Biol2023
35076276Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".mSystems2022
35396471Unlocking capacities of genomics for the COVID-19 response and future pandemics.Nat Methods2022
36384576Author Correction: Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative.Genome Med2022
36085083Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative.Genome Med2022
32568371Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.Brief Bioinform2021
34698524Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations.J Comput Biol2021
34698508From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering.J Comput Biol2021
34492010MicrobeTrace: Retooling molecular epidemiology for rapid public health response.PLoS Comput Biol2021
34446078Technology dictates algorithms: recent developments in read alignment.Genome Biol2021
34214168Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.Nucleic Acids Res2021
34264744Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.J Comput Biol2021
33948451Unlocking capacities of viral genomics for the COVID-19 pandemic response.ArXiv2021
33467166Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria.Viruses2021
32295123Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria.Viruses2020
33327932Using earth mover's distance for viral outbreak investigations.BMC Genomics2020
32183840Benchmarking of computational error-correction methods for next-generation sequencing data.Genome Biol2020
29304222QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.Bioinformatics2018
29547882Repeat-aware evaluation of scaffolding tools.Bioinformatics2018
29244009Inference of genetic relatedness between viral quasispecies from sequencing data.BMC Genomics2017
26841499[Prediction of Protein Conformational Mobility and Evaluation of Its Reliability Using Small-Angle X-ray Scattering].Biofizika2015
26422261Modeling conformational redox-switch modulation of human succinic semialdehyde dehydrogenase.Proteins2015
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Collaborators

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School of Pharmacy, University of Southern California
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David Geffen School of Medicine, University of California los angeles
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US National Museum of Natural History, Smithsonian Institution
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Perelman School of Medicine, University of Pennsylvania
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John P Barton
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Rishi R Goel
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Christian Brueffer
Lund University
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Joel O Wertheim
University of California
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Casey S Greene
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Anthony Gitter
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Vikas Bansal
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