|
| 37214927 | Bile acid fitness determinants of a isolate from a human pouchitis patient. | | 2023 |
| 38014192 | Multiomic analysis reveals cellular and epigenetic plasticity in intestinal pouches of ulcerative colitis patients. | | 2023 |
| 38063424 | Bile acid fitness determinants of a isolate from a human pouchitis patient. | | 2023 |
| 35883234 | Geochemical and microbiological profiles in hydrothermal extreme acidic environments (Pisciarelli Spring, Campi Flegrei, Italy). | FEMS Microbiology Ecology | 2022 |
| 34111469 | Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10 Mice. | Gastroenterology | 2021 |
| 29780369 | Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life. | Frontiers in Microbiology | 2018 |
| 30247697 | Microbiome profiling in extremely acidic soils affected by hydrothermal fluids: the case of the Solfatara Crater (Campi Flegrei, southern Italy). | FEMS Microbiology Ecology | 2018 |
| 30089648 | Profiling of Bacterial and Fungal Microbial Communities in Cystic Fibrosis Sputum Using RNA. | mSphere | 2018 |
| 30135504 | Sex-specific associations of infants' gut microbiome with arsenic exposure in a US population. | Scientific Reports | 2018 |
| 29795209 | The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth. | Pediatr Res | 2018 |
| 28221248 | Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis. | Inflammatory Bowel Diseases | 2017 |
| 28848514 | Seasonal Succession and Spatial Patterns of Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping. | Frontiers in Microbiology | 2017 |
| 28375652 | The Microbiome and Human Biology. | Annu Rev Genomics Hum Genet | 2017 |
| 27605925 | Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation. | Frontiers in Microbiology | 2016 |
| 25394613 | Fetal exposures and perinatal influences on the stool microbiota of premature infants. | J Matern Fetal Neonatal Med | 2016 |
| 26933220 | Reply to Prince et al.: Ability of chemical dispersants to reduce oil spill impacts remains unclear. | Proceedings of the National Academy of Sciences of the United States of America | 2016 |
| 26752321 | Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants. | JAMA Pediatr | 2016 |
| 27287321 | Relationship of Bacterial Richness to Organic Degradation Rate and Sediment Age in Subseafloor Sediment. | Applied and Environmental Microbiology | 2016 |
| 27358393 | Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. | FEMS Microbiology Reviews | 2016 |
| 27079612 | Insights into the pathogenesis of ulcerative colitis from a murine model of stasis-induced dysbiosis, colonic metaplasia, and genetic susceptibility. | Am J Physiol Gastrointest Liver Physiol | 2016 |
| 26943329 | Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease. | PLoS One | 2016 |
| 26230048 | Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. | ISME Journal | 2016 |
| 26430855 | Bacterial diversity and community composition from seasurface to subseafloor. | ISME Journal | 2016 |
| 27935837 | Patient-Specific Bacteroides Genome Variants in Pouchitis. | mBio | 2016 |
| 24936765 | A single genus in the gut microbiome reflects host preference and specificity. | ISME Journal | 2015 |
| 25714718 | Sewage reflects the microbiomes of human populations. | mBio | 2015 |
| 25325381 | Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. | ISME Journal | 2015 |
| 25818499 | Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis. | J Pediatr | 2015 |
| 25764538 | Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents. | FEMS Microbiology Ecology | 2015 |
| 26231648 | Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups. | Applied and Environmental Microbiology | 2015 |
| 26553985 | Chemical dispersants can suppress the activity of natural oil-degrading microorganisms. | Proceedings of the National Academy of Sciences of the United States of America | 2015 |
| 26500826 | Anvi'o: an advanced analysis and visualization platform for 'omics data. | PeerJ | 2015 |
| 26712546 | Identification of Specialists and Abundance-Occupancy Relationships among Intestinal Bacteria of Aves, Mammalia, and Actinopterygii. | Applied and Environmental Microbiology | 2015 |
| 25093819 | Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. | PLoS Biol | 2014 |
| 25408892 | Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis. | Microbiome | 2014 |
| 25279954 | Evolutionary strategies of viruses, bacteria and archaea in hydrothermal vent ecosystems revealed through metagenomics. | PLoS ONE | 2014 |
| 24401862 | Host-specificity among abundant and rare taxa in the sponge microbiome. | ISME Journal | 2014 |
| 24152717 | MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment. | ISME J | 2014 |
| 24332997 | Iron supplementation does not worsen respiratory health or alter the sputum microbiome in cystic fibrosis. | J Cyst Fibros | 2014 |
| 24499292 | VAMPS: a website for visualization and analysis of microbial population structures. | BMC Bioinformatics | 2014 |
| 23698723 | DRISEE overestimates errors in metagenomic sequencing data. | Briefings in Bioinformatics | 2014 |
| 24860552 | Metagenomic analysis of the medicinal leech gut microbiota. | Frontiers in Microbiology | 2014 |
| 24529162 | Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects. | Microbiome | 2014 |
| 25071935 | The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention. | Microbiome | 2014 |
| 24921648 | Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. | PLoS One | 2014 |
| 24599478 | Comparison of bacterial communities in sands and water at beaches with bacterial water quality violations. | PLoS One | 2014 |
| 25068658 | The microbiota regulates susceptibility to Fas-mediated acute hepatic injury. | Lab Invest | 2014 |
| 23324742 | Marine bacteria exhibit a bipolar distribution. | Proc Natl Acad Sci U S A | 2013 |
| 24358444 | Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. | Methods in Ecology and Evolution | 2013 |
| 24040219 | Shifts in the microbial community composition of Gulf Coast beaches following beach oiling. | PLoS ONE | 2013 |