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Author Details

Lars M Steinmetz
Stanford University
1998
193
68
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36909618A scalable, GMP-compatible, autologous organotypic cell therapy for Dystrophic Epidermolysis Bullosa.bioRxiv2023
37562410Pooled Genome-Scale CRISPR Screens in Single Cells.Annu Rev Genet2023
37483015Large scale microfluidic CRISPR screening for increased amylase secretion in yeast.Lab Chip2023
37704604Gut barrier defects, intestinal immune hyperactivation and enhanced lipid catabolism drive lethality in NGLY1-deficient Drosophila.Nat Commun2023
37217719Atlas of mRNA translation and decay for bacteria.Nat Microbiol2023
37463913Mislocalization of pathogenic RBM20 variants in dilated cardiomyopathy is caused by loss-of-interaction with Transportin-3.Nat Commun2023
37066398Gut barrier defects, increased intestinal innate immune response, and enhanced lipid catabolism drive lethality in <i>N</i> -glycanase 1 deficient <i>Drosophila</i>.bioRxiv2023
36653465Cardiac splicing as a diagnostic and therapeutic target.Nat Rev Cardiol2023
36779527Cell sorters see things more clearly now.Mol Syst Biol2023
34663920High-throughput functional characterization of protein phosphorylation sites in yeast.Nat Biotechnol2022
35938400Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors.Circulation2022
36367695Deep phenotyping of two preclinical mouse models and a cohort of RBM20 mutation carriers reveals no sex-dependent disease severity in <i>RBM20</i> cardiomyopathy.Am J Physiol Heart Circ Physiol2022
36266340NIMA-related kinase 9 regulates the phosphorylation of the essential myosin light chain in the heart.Nat Commun2022
36293084Genotype Complements the Phenotype: Identification of the Pathogenicity of an LMNA Splice Variant by Nanopore Long-Read Sequencing in a Large DCM Family.Int J Mol Sci2022
35918316Transcriptomic diversity in human medullary thymic epithelial cells.Nat Commun2022
35258337KIR<sup>+</sup>CD8<sup>+</sup> T cells suppress pathogenic T cells and are active in autoimmune diseases and COVID-19.Science2022
35100419Assembly-dependent translation of subunits 6 (Atp6) and 9 (Atp9) of ATP synthase in yeast mitochondria.Genetics2022
34878535Patient-derived gene and protein expression signatures of NGLY1 deficiency.J Biochem2022
35239377Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.Science2022
35050652High-speed fluorescence image-enabled cell sorting.Science2022
33094674Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast.RNA Biol2021
33826901The chaperone-binding activity of the mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stress.Cell Rep2021
33649320Identification of leukemic and pre-leukemic stem cells by clonal tracking from single-cell transcriptomics.Nat Commun2021
33568224CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate.Biotechnol Biofuels2021
33813118Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.Clin Microbiol Infect2021
34981055Human KIR <sup>+</sup> CD8 <sup>+</sup> T cells target pathogenic T cells in Celiac disease and are active in autoimmune diseases and COVID-19.bioRxiv2021
34849874Regulation of Msh4-Msh5 association with meiotic chromosomes in budding yeast.Genetics2021
34731027High-Throughput Nucleotide Resolution Predictions of Assay Limitations Increase the Reliability and Concordance of Clinical Tests.JCO Clin Cancer Inform2021
34575212RBM20-Related Cardiomyopathy: Current Understanding and Future Options.J Clin Med2021
34536502Case-control study evaluating risk factors for SARS-CoV-2 outbreak amongst healthcare personnel at a tertiary care center.Am J Infect Control2021
34623901Integrated single-cell transcriptomics and epigenomics reveals strong germinal center-associated etiology of autoimmune risk loci.Sci Immunol2021
34244519Single-molecule, full-length transcript isoform sequencing reveals disease-associated RNA isoforms in cardiomyocytes.Nat Commun2021
33330942A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae.Nucleic Acids Res2021
32483332Targeted Perturb-seq enables genome-scale genetic screens in single cells.Nat Methods2020
31871321Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization.Nat Cell Biol2020
31733337Liver-specific deletion of Ngly1 causes abnormal nuclear morphology and lipid metabolism under food stress.Biochim Biophys Acta Mol Basis Dis2020
33226342Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells.Elife2020
32796939GOTI, a method to identify genome-wide off-target effects of genome editing in mouse embryos.Nat Protoc2020
32905764iPSC Modeling of RBM20-Deficient DCM Identifies Upregulation of RBM20 as a Therapeutic Strategy.Cell Rep2020
32816037TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes.Nucleic Acids Res2020
32265286Loss of N-Glycanase 1 Alters Transcriptional and Translational Regulation in K562 Cell Lines.G3 (Bethesda)2020
32293132A Circulating Bioreactor Reprograms Cancer Cells Toward a More Mesenchymal Niche.Adv Biosyst2020
30871351Regional Variation in RBM20 Causes a Highly Penetrant Arrhythmogenic Cardiomyopathy.Circ Heart Fail2019
33654857Yeast Single-cell RNA-seq, Cell by Cell and Step by Step.Bio Protoc2019
31659326Biological plasticity rescues target activity in CRISPR knock outs.Nat Methods2019
31740578Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast.Genome Res2019
30925180Evolthon: A community endeavor to evolve lab evolution.PLoS Biol2019
30819928Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos.Science2019
30992377Select sequencing of clonally expanded CD8<sup>+</sup> T cells reveals limits to clonal expansion.Proc Natl Acad Sci U S A2019
30718850Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations.Nat Microbiol2019
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Collaborators

Ronald W Davis
Stanford University
Co-authored papers 21
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 18
Chenchen Zhu
Shantou University Medical College
Co-authored papers 12
Michelle Nguyen
School of Medicine Stanford University
Co-authored papers 10
Peter J Oefner
Institute of Functional Genomics, University of Regensburg
Co-authored papers 6
Michael Snyder
Stanford University
Co-authored papers 6
Mark M Davis
Co-authored papers 4
Stephen Buratowski
Harvard Medical School
Co-authored papers 4
Michael Gotthardt
Co-authored papers 4
Torben Heick Jensen
Universitetsbyen 81, Aarhus University
Co-authored papers 4
Simon Anders
Heidelberg University
Co-authored papers 4
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 4
Eul??lia de Nadal
Universitat Pompeu Fabra
Co-authored papers 3
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 3
Mariona Nadal-Ribelles
Universitat Pompeu Fabra (UPF)
Co-authored papers 3
Francesc Posas
Universitat Pompeu Fabra
Co-authored papers 3
Jan O Korbel
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Victoria N Parikh
Stanford University
Co-authored papers 3
Robin Andersson
University of Copenhagen
Co-authored papers 2
Peer Bork
University of Wurzburg
Co-authored papers 2
Jorge R Oksenberg
Co-authored papers 2
Charles Boone
University of Toronto
Co-authored papers 2
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 2
Anshul Kundaje
Stanford University.
Co-authored papers 2
Yun Chen
Hospital of Obstetrics and Gynecology, Fudan University
Co-authored papers 2
Pawe?? Olszewski
Medical University of Gdansk
Co-authored papers 2
Yapeng Su
Fred Hutchinson Cancer Research Center, USA Clinical Research Division
Co-authored papers 2
Euan A Ashley
Stanford University
Co-authored papers 2
Carlos D Bustamante
Stanford University
Co-authored papers 2
Alejandro Reyes
Dana-Farber Cancer Institute
Co-authored papers 2
Release 1.2