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Author Details

Katherine E Varley
Huntsman Cancer Institute
2007
34
23
PMIDPaper TitleJournal TitlePublished Year
36930677TXNIP loss expands Myc-dependent transcriptional programs by increasing Myc genomic binding.PLoS Biol2023
34780648MS4A3 promotes differentiation in chronic myeloid leukemia by enhancing common β-chain cytokine receptor endocytosis.Blood2022
35704571Tet2 coordinates with Foxo1 and Runx1 to balance T follicular helper cell and T helper 1 cell differentiation.Sci Adv2022
35659930Comprehensive evaluation and efficient classification of BRCA1 RING domain missense substitutions.Am J Hum Genet2022
36536477Loss of G0/G1 switch gene 2 (G0S2) promotes disease progression and drug resistance in chronic myeloid leukaemia (CML) by disrupting glycerophospholipid metabolism.Clin Transl Med2022
35221336A human breast cancer-derived xenograft and organoid platform for drug discovery and precision oncology.Nat Cancer2022
33239679The lingering mysteries of metastatic recurrence in breast cancer.Br J Cancer2021
34880227A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer.Nat Commun2021
32313087Spatially-resolved quantification of proteins in triple negative breast cancers reveals differences in the immune microenvironment associated with prognosis.Sci Rep2020
32070401TBCRC 002: a phase II, randomized, open-label trial of preoperative letrozole with or without bevacizumab in postmenopausal women with newly diagnosed stage 2/3 hormone receptor-positive and HER2-negative breast cancer.Breast Cancer Res2020
32816914STAT3 and GR Cooperate to Drive Gene Expression and Growth of Basal-Like Triple-Negative Breast Cancer.Cancer Res2020
31048497A Multigene Assay Determines Risk of Recurrence in Patients with Triple-Negative Breast Cancer.Cancer Res2019
29284681A novel <i>AGGF1-PDGFRb</i> fusion in pediatric T-cell acute lymphoblastic leukemia.Haematologica2018
30089273Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development.Cell Rep2018
28030809Genomic regulation of invasion by STAT3 in triple negative breast cancer.Oncotarget2017
26980599Expression of the MHC Class II Pathway in Triple-Negative Breast Cancer Tumor Cells Is Associated with a Good Prognosis and Infiltrating Lymphocytes.Cancer Immunol Res2016
25779953TBCRC 019: A Phase II Trial of Nanoparticle Albumin-Bound Paclitaxel with or without the Anti-Death Receptor 5 Monoclonal Antibody Tigatuzumab in Patients with Triple-Negative Breast Cancer.Clin Cancer Res2015
24929677Recurrent read-through fusion transcripts in breast cancer.Breast Cancer Res Treat2014
23325432Dynamic DNA methylation across diverse human cell lines and tissues.Genome Res2013
24076218Distinct properties of cell-type-specific and shared transcription factor binding sites.Mol Cell2013
23417056Early de novo DNA methylation and prolonged demethylation in the muscle lineage.Epigenetics2013
22128135Transposase mediated construction of RNA-seq libraries.Genome Res2012
23204437CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice.Proc Natl Acad Sci U S A2012
23019147Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner.Genome Res2012
22955980Widespread plasticity in CTCF occupancy linked to DNA methylation.Genome Res2012
22703188IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes.BMC Genomics2012
22300769Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.Genome Res2012
21852959Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.PLoS Genet2011
20627893Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.Genome Res2010
19252504Quantification of rare allelic variants from pooled genomic DNA.Nat Methods2009
20147217Nested Patch PCR for highly multiplexed amplification of genomic loci.Cold Spring Harb Protoc2009
19494183Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing.Nucleic Acids Res2009
18849522Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes.Genome Res2008
17327921Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach.PLoS One2007
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Collaborators

Jason Gertz
Huntsman Cancer Institute, University of Utah
Co-authored papers 16
Richard M Myers
HudsonAlpha Institute for Biotechnology
Co-authored papers 15
William E Grizzle
University of Alabama at Birmingham
Co-authored papers 5
Timothy E Reddy
Co-authored papers 5
Florencia Pauli
Co-authored papers 4
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 4
Brian J Druker
Oregon Health & Science University
Co-authored papers 3
Kevin M Bowling
Washington University School of Medicine
Co-authored papers 3
Jeffery M Vahrenkamp
Huntsman Cancer Institute
Co-authored papers 3
Matthew S Zabriskie
University of Utah
Co-authored papers 2
Jeffrey W Tyner
Oregon Health & Science University School of Medicine
Co-authored papers 2
Rita Nanda
Co-authored papers 2
Minetta C Liu
Co-authored papers 2
Bryan E Welm
Co-authored papers 2
Anna M Eiring
Texas Tech University Health Sciences Center at El Paso
Co-authored papers 2
Anthony D Pomicter
Huntsman Cancer Institute, University of Utah
Co-authored papers 2
Barbara J Wold
Merkin Institute for Translational Research, California Institute of Technology
Co-authored papers 2
E Christopher Partridge
Co-authored papers 2
Kristofer C Berrett
Huntsman Cancer Institute, The University of Utah
Co-authored papers 2
Christopher A Eide
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 2
Jonathan M Ahmann
Huntsman Cancer Institute, The University of Utah
Co-authored papers 2
Brian A Williams
Co-authored papers 2
Anna Maria Storniolo
Co-authored papers 2
Dongqing Yan
Inner Mongolia University
Co-authored papers 2
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 2
Michael W Deininger
University of Utah Huntsman Cancer Institute
Co-authored papers 2
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 2
Anna Senina
Huntsman Cancer Institute, The University of Utah
Co-authored papers 2
Jae Y Hwang
The University of Utah
Co-authored papers 2
Nancy U Lin
Co-authored papers 2
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