Author details

Full Name

Qian Zhu

Affiliation

Boston Children's Hospital

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35385744	Developmental maturation of the hematopoietic system controlled by a Lin28b-let-7-Cbx2 axis.	Cell Rep	2022
35839780	Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells.	Cell Chem Biol	2022
35534777	IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia.	Nat Cancer	2022
34716321	Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture.	Nat Commun	2021
33685491	Giotto: a toolbox for integrative analysis and visualization of spatial expression data.	Genome Biol	2021
33649594	Transcription factor competition at the Î³-globin promoters controls hemoglobin switching.	Nat Genet	2021
33731942	Author Correction: Transcription factor competition at the Î³-globin promoters controls hemoglobin switching.	Nat Genet	2021
31529022	Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations.	Bioinformatics	2020
32817427	Enhancer dependence of cell-type-specific gene expression increases with developmental age.	Proc Natl Acad Sci U S A	2020
30758831	A Hidden Markov Random Field Model for Detecting Domain Organizations from Spatial Transcriptomic Data.	Methods Mol Biol	2019
31500663	CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis.	Genome Biol	2019
31278265	Accurate estimation of cell-type composition from gene expression data.	Nat Commun	2019
30911168	Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.	Nature	2019
29758032	A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.	PLoS Comput Biol	2018
30404000	Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas.	Cell Rep	2018
30371680	Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data.	Nat Biotechnol	2018
29606353	Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch.	Cell	2018
28666115	IFNÎ³-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment.	Cell	2017
25581801	Targeted exploration and analysis of large cross-platform human transcriptomic compendia.	Nat Methods	2015
25431329	Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms.	Bioinformatics	2015
23950145	Defining cell-type specificity at the transcriptional level in human disease.	Genome Res	2013
24257477	Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors.	Genome Biol	2013
24037214	Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies.	Bioinformatics	2013

1 - 23 of 23

Michael I Love

University of North Carolina at Chapel Hill

Career Start Year 2011

Number of shared co-authors 3

Piotr J Balwierz

MRC London Institute of Medical Sciences

Career Start Year 2009

Number of shared co-authors 0

Joshua D Welch

University of Michigan ann arbor

Career Start Year 2009

Number of shared co-authors 4

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Venkat S Malladi

UT Southwestern Medical Center

Career Start Year 2008

Number of shared co-authors 3

Anagha Joshi

University of Bergen

Career Start Year 2007

Number of shared co-authors 0

Matthew E Ritchie

The University of Melbourne

Career Start Year 2006

Number of shared co-authors 3

Zizhen Yao

Allen Institute for Brain Science

Career Start Year 2006

Number of shared co-authors 2

Rahul Satija

Center for Genomics and Systems Biology, New York University

Career Start Year 2006

Number of shared co-authors 4

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 1

Kun Qu

University of Science and Technology of China

Career Start Year 2005

Number of shared co-authors 1

Jessica C Mar

Australian Institute for Bioengineering and Nanotechnology, University of Queensland

Career Start Year 2005

Number of shared co-authors 0

Gary C Hon

Cecil H. and Ida Green Center for Reproductive Biology Sciences

Career Start Year 2004

Number of shared co-authors 1

John C Marioni

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 2004

Number of shared co-authors 2

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 0

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 4

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 0

Gerald Quon

University of California davis

Career Start Year 2003

Number of shared co-authors 0

Shintaro Katayama

Folkhalsan Research Center

Career Start Year 2003

Number of shared co-authors 0

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Career Start Year 2002

Number of shared co-authors 0

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 2

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 0

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 1

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 1

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 6

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 1

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Career Start Year 1994

Number of shared co-authors 0

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 1

Hideya Kawaji

RIKEN Center for Integrative Medical Sciences

Career Start Year 1984

Number of shared co-authors 0

row(s) 1 - 30 of 30

Guo-Cheng Yuan

Dana-Farber Cancer Institute, Harvard School of Public Health

Co-authored papers 11

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 8

Stuart H Orkin

Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School

Co-authored papers 8

Arjun Krishnan

Michigan State University

Co-authored papers 4

Young-Suk Lee

Center for RNA Research, Institute for Basic Science

Co-authored papers 4

Vessela N Kristensen

Faculty of Clinical Medicine, University of Oslo

Co-authored papers 3

Daniel E Bauer

Co-authored papers 3

Ruben Dries

Boston University School of Medicine

Co-authored papers 3

Luca Pinello

Co-authored papers 2

Aaron K Wong

Flatiron Institute, Simons Foundation

Co-authored papers 2

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Casey S Greene

Co-authored papers 2

Christopher Y Park

NYU Robert I. Grossman School of Medicine

Co-authored papers 1

Masami Kehata

Co-authored papers 1

Clemens D Cohen

Medical Clinic and Policlinic IV, University of Munich

Co-authored papers 1

John R Kelsoe