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Author Details

Jessica Nordlund
Uppsala University
2009
58
21
PMIDPaper TitleJournal TitlePublished Year
37610265Multimodal Single-Cell Sequencing of B Cells in Primary Sjögren's Syndrome.Arthritis Rheumatol2024
37463882Next generation pan-cancer blood proteome profiling using proximity extension assay.Nat Commun2023
37758813Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma.Sci Rep2023
37664045Feasibility to use whole-genome sequencing as a sole diagnostic method to detect genomic aberrations in pediatric B-cell acute lymphoblastic leukemia.Front Oncol2023
38012772Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.Genome Biol2023
38066241Multimodal classification of molecular subtypes in pediatric acute lymphoblastic leukemia.NPJ Precis Oncol2023
37620373Long-read whole-genome analysis of human single cells.Nat Commun2023
37218648Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia.Genes Chromosomes Cancer2023
34647650Transcriptome sequencing of archived lymphoma specimens is feasible and clinically relevant using exome capture technology.Genes Chromosomes Cancer2022
35406529Next Generation Plasma Proteomics Identifies High-Precision Biomarker Candidates for Ovarian Cancer.Cancers (Basel)2022
35402448A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias.Front Med (Lausanne)2022
35388090scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation.Sci Rep2022
36310597Tackling the translational challenges of multi-omics research in the realm of European personalised medicine: A workshop report.Front Mol Biosci2022
36327219Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.PLoS Genet2022
34049715Expression of BCL6 in paediatric B-cell acute lymphoblastic leukaemia and association with prognosis.Pathology2021
33837451Immune cells lacking Y chromosome show dysregulation of autosomal gene expression.Cell Mol Life Sci2021
34949218Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.Genome Biol2021
34872606The SEQC2 epigenomics quality control (EpiQC) study.Genome Biol2021
34504347Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.Nat Biotechnol2021
34504346Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.Nat Biotechnol2021
33987955RAG1 co-expression signature identifies ETV6-RUNX1-like B-cell precursor acute lymphoblastic leukemia in children.Cancer Med2021
34362951Mutational patterns and clonal evolution from diagnosis to relapse in pediatric acute lymphoblastic leukemia.Sci Rep2021
34200630DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML).Genes (Basel)2021
34312421Leukocytes with chromosome Y loss have reduced abundance of the cell surface immunoprotein CD99.Sci Rep2021
32573712Association of aberrant ASNS imprinting with asparaginase sensitivity and chromosomal abnormality in childhood BCP-ALL.Blood2020
34079956The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome.Nat Cancer2020
32029838Clinicopathological features and prognostic value of SOX11 in childhood acute lymphoblastic leukemia.Sci Rep2020
32054878Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing.Sci Rep2020
31640433Overexpression of chromatin remodeling and tyrosine kinase genes in iAMP21-positive acute lymphoblastic leukemia.Leuk Lymphoma2020
32605573Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion.BMC Biol2020
30484860CD99 expression is strongly associated with clinical outcome in children with B-cell precursor acute lymphoblastic leukaemia.Br J Haematol2019
30989628Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions.Mol Neurobiol2019
30378076Computational and Statistical Analysis of Array-Based DNA Methylation Data.Methods Mol Biol2019
28887175Epigenetics in pediatric acute lymphoblastic leukemia.Semin Cancer Biol2018
30304863De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.Genes (Basel)2018
29668744Data quality of whole genome bisulfite sequencing on Illumina platforms.PLoS One2018
29515676DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia.Clin Epigenetics2018
29655283Transcription profiling of peripheral B cells in antibody-positive primary Sjögren's syndrome reveals upregulated expression of CX3CR1 and a type I and type II interferon signature.Scand J Immunol2018
27786413DNA methylation profiling of pediatric B-cell lymphoblastic leukemia with KMT2A rearrangement identifies hypomethylation at enhancer sites.Pediatr Blood Cancer2017
28649984CD27 expression and its association with clinical outcome in children and adults with pro-B acute lymphoblastic leukemia.Blood Cancer J2017
28806978Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles.J Hematol Oncol2017
27899585SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing.Nucleic Acids Res2017
26857698Genome-wide DNA methylation analysis in multiple tissues in primary Sjögren's syndrome reveals regulatory effects at interferon-induced genes.Ann Rheum Dis2016
26553913CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array.Bioinformatics2016
26494837PAX5-ESRRB is a recurrent fusion gene in B-cell precursor pediatric acute lymphoblastic leukemia.Haematologica2016
27590521Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes.Oncotarget2016
27620872Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia.Genome Res2016
27552300DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands.Epigenomics2016
25355294The mutational landscape in pediatric acute lymphoblastic leukemia deciphered by whole genome sequencing.Hum Mutat2015
26018335The clinical impact of IKZF1 deletions in paediatric B-cell precursor acute lymphoblastic leukaemia is independent of minimal residual disease stratification in Nordic Society for Paediatric Haematology and Oncology treatment protocols used between 1992 and 2013.Br J Haematol2015
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Collaborators

Ann-Christine Syvänen
Co-authored papers 25
Yanara Marincevic-Zuniga
Uppsala University
Co-authored papers 10
Ulrika Liljedahl
Co-authored papers 6
Weida Tong
National Center for Toxicological Research
Co-authored papers 5
Ann Nordgren
Co-authored papers 5
Huixiao Hong
Co-authored papers 5
Andreas Scherer
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 5
Ulf Gyllensten
Co-authored papers 4
Wenming Xiao
Human Phenome Institute and Shanghai Cancer Center, Fudan University
Co-authored papers 4
Baitang Ning
Co-authored papers 4
Lars Rönnblom
Co-authored papers 4
Charles Wang
Co-authored papers 4
Ming Shi
Co-authored papers 3
Jonathan Foox
Co-authored papers 3
Adam Ameur
Co-authored papers 3
Lili Milani
Co-authored papers 3
Joshua Xu
Co-authored papers 3
Daniel Sinnett
Sainte-Justine University Hospital Research Center
Co-authored papers 3
Gunnel Nordmark
Co-authored papers 3
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 2
Per-Henrik Edqvist
Uppsala University
Co-authored papers 2
Zivana Tezak
Center for Devices and Radiological Health
Co-authored papers 2
John M Greally
Co-authored papers 2
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 2
Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 2
Martin Ingelsson
Co-authored papers 2
Pawe?? Olszewski
Medical University of Gdansk
Co-authored papers 2
Ogan D Abaan
Illumina Inc.
Co-authored papers 2
Roderick V Jensen
Virginia Tech
Co-authored papers 2
Tomi Pastinen
Co-authored papers 2
Release 1.2