Author details

Full Name

Eyal Akiva

Affiliation

University of California san francisco

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32956445	Human SIRT1 Multispecificity Is Modulated by Active-Site Vicinity Substitutions during Natural Evolution.	Mol Biol Evol	2021
33674467	Parallel molecular mechanisms for enzyme temperature adaptation.	Science	2021
34437092	Revealing enzyme functional architecture via high-throughput microfluidic enzyme kinetics.	Science	2021
31072492	Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions.	Methods Enzymol	2019
31074977	Structural, Kinetic, and Mechanistic Analysis of an Asymmetric 4-Oxalocrotonate Tautomerase Trimer.	Biochemistry	2019
29184004	A global view of structure-function relationships in the tautomerase superfamily.	J Biol Chem	2018
30052428	Revealing Unexplored Sequence-Function Space Using Sequence Similarity Networks.	Biochemistry	2018
30097089	Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.	Methods Enzymol	2018
27812939	Evaluating Functional Annotations of Enzymes Using the Gene Ontology.	Methods Mol Biol	2017
28365730	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
28342985	Mast cells are directly activated by contact with cancer cells by a mechanism involving autocrine formation of adenosine and autocrine/paracrine signaling of the adenosine A3 receptor.	Cancer Lett	2017
29078300	Evolutionary and molecular foundations of multiple contemporary functions of the nitroreductase superfamily.	Proc Natl Acad Sci U S A	2017
28605775	Biocuration in the structure-function linkage database: the anatomy of a superfamily.	Database (Oxford)	2017
25654171	[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.	Biochemistry	2015
26496596	Evolutionary reprograming of protein-protein interaction specificity.	Cell	2015
24271399	The Structure-Function Linkage Database.	Nucleic Acids Res	2014
24980702	Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks.	Elife	2014
24756107	Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere.	PLoS Biol	2014
22253583	A dynamic view of domain-motif interactions.	PLoS Comput Biol	2012
22927804	Prediction of mutational tolerance in HIV-1 protease and reverse transcriptase using flexible backbone protein design.	PLoS Comput Biol	2012
22190034	Global landscape of HIV-human protein complexes.	Nature	2011
20802208	Preferential use of protein domain pairs as interaction mediators: order and transitivity.	Bioinformatics	2010
18757736	Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains.	Proc Natl Acad Sci U S A	2008
17184549	Evolutionary conservation of domain-domain interactions.	Genome Biol	2006

1 - 24 of 24

Matt E Oates

University of Bristol

Career Start Year 2013

Number of shared co-authors 1

Angela D Wilkins

Baylor College of Medicine

Career Start Year 2010

Number of shared co-authors 2

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 1

Dmitry Korkin

Worcester Polytechnic Institute

Career Start Year 2002

Number of shared co-authors 1

Madan Mohan Babu

St. Jude Children's Research Hospital

Career Start Year 2002

Number of shared co-authors 2

Julian Gough

Medical Research Council Laboratory of Molecular Biology

Career Start Year 2001

Number of shared co-authors 4

Jeffrey B Bonanno

Albert Einstein College of Medicine

Career Start Year 1999

Number of shared co-authors 15

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 1

Patrick Aloy

Institucio Catalana de Recerca i Estudis Avancats (ICREA)

Career Start Year 1997

Number of shared co-authors 1

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 3

Florencio Pazos

National Centre for Biotechnology (CNB-CSIC)

Career Start Year 1997

Number of shared co-authors 1

Yu Xia

College of Information Engineering, Zhejiang University of Technology

Career Start Year 1996

Number of shared co-authors 5

Orly Dym

Weizmann Institute of Science

Career Start Year 1995

Number of shared co-authors 2

Lukasz Jaroszewski

University of California Riverside School of Medicine

Career Start Year 1995

Number of shared co-authors 3

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1995

Number of shared co-authors 3

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 9

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Career Start Year 1993

Number of shared co-authors 0

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 1

Burkhard Rost

Technical University of Munich (TUM)

Career Start Year 1992

Number of shared co-authors 5

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 0

Robert B Russell

Heidelberg University

Career Start Year 1991

Number of shared co-authors 1

Christine Orengo

University College London, Institute of Structural and Molecular Biology

Career Start Year 1989

Number of shared co-authors 6

Ramanathan Sowdhamini

Indian Institute of Science

Career Start Year 1989

Number of shared co-authors 3

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 6

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 6

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 2

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 3

Olivier Lichtarge

Baylor College of Medicine

Career Start Year 1981

Number of shared co-authors 3

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 2

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 12

row(s) 1 - 30 of 30

Patricia C Babbitt

University of California san francisco

Co-authored papers 15

Gemma L Holliday

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 7

Shoshana D Brown

University of California san francisco

Co-authored papers 6

John H Morris

University of California san francisco

Co-authored papers 4

Elaine C Meng

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 4

Zohar Barnett-Itzhaki

Co-authored papers 4

Thomas E Ferrin

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 3

Conrad C Huang

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 3

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 2

Steven C Almo

Albert Einstein College of Medicine

Co-authored papers 2

Tanja Kortemme

University of California san francisco

Co-authored papers 2

Brandan Hillerich

Cue BioPharma Inc.

Co-authored papers 2

Susan T Mashiyama

University of California san francisco

Co-authored papers 2

Ronald D Seidel

Albert Einstein College of Medicine

Co-authored papers 2

Matthew W Vetting

Albert Einstein College of Medicine

Co-authored papers 2

Alan D Frankel

University of California san francisco

Co-authored papers 1

Anthony J O'Donoghue

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Co-authored papers 1

Wesley I Sundquist

University of Utah School of Medicine

Co-authored papers 1

Stefanie J??ger

Institute of Molecular Biosciences, Goethe University Frankfurt

Co-authored papers 1

Rafael Toro

Medical College of Wisconsin

Co-authored papers 1

Jeffrey R Johnson

Gladstone Institutes

Co-authored papers 1

Megan C Branch

University of Wisconsin

Co-authored papers 1

Iv??n D'Orso

University of Texas Southwestern Medical Center

Co-authored papers 1

David A Maltby

The University of Sydney

Co-authored papers 1

Marie E Fahey

University of California San Francisco

Co-authored papers 1

Natali Gulbahce

Complete Genomics Inc.

Co-authored papers 1

Ryan D Hernandez

University of California san francisco

Co-authored papers 1

Kathryn E McGovern

University of Arizona

Co-authored papers 1

John A T Young

Roche Pharma

Co-authored papers 1

Jungwook Kim

Gwangju Institute of Science and Technology

Co-authored papers 1

1 - 30

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