Skip to Main Content

Author Details

Karsten Hokamp
Smurfit Institute of Genetics, Trinity College of Dublin
1999
87
34
PMIDPaper TitleJournal TitlePublished Year
37243544Targeting the NLRP3 inflammasome reduces inflammation in hidradenitis suppurativa skin.Br J Dermatol2023
38076297BOSC 2023, the 24th annual Bioinformatics Open Source Conference.F1000Res2023
37654438Mechanically activated mesenchymal-derived bone cells drive vessel formation via an extracellular vesicle mediated mechanism.J Tissue Eng2023
37566621Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the yeast Tup1-Cyc8 complex.PLoS Genet2023
36127846Enhanced flavour profiles through radicicol induced genomic variation in the lager yeasts, Saccharomyces pastorianus.Yeast2022
35389986Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation.PLoS Genet2022
36329021von Willebrand factor links primary hemostasis to innate immunity.Nat Commun2022
36128559BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference.F1000Res2022
34009357The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity.Nucleic Acids Res2021
34793837CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages.J Biol Chem2021
34460873Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica.PLoS Pathog2021
34721839BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference.F1000Res2021
34071089Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor.Cancers (Basel)2021
32655363Non-photoreceptor Expression of <i>Tulp1</i> May Contribute to Extensive Retinal Degeneration in <i>Tulp1-/-</i> Mice.Front Neurosci2020
32106283A population of proinflammatory T cells coexpresses αβ and γδ T cell receptors in mice and humans.J Exp Med2020
33293378Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes.mBio2020
30645593Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.PLoS Biol2019
32025286BOSC 2019, the 20th annual Bioinformatics Open Source Conference.F1000Res2019
31110484Transcriptomic Analysis of <i>Mecp2</i> Mutant Mice Reveals Differentially Expressed Genes and Altered Mechanisms in Both Blood and Brain.Front Psychiatry2019
29243812Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney.J Pathol2018
30210780The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).F1000Res2018
30127006Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2.Proc Natl Acad Sci U S A2018
29988937The impact of common genetic variants in the mitochondrial glycine cleavage system on relevant metabolites.Mol Genet Metab Rep2018
29986115The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978.Nucleic Acids Res2018
29628311A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.Mol Cell2018
29487214Role of a single noncoding nucleotide in the evolution of an epidemic African clade of <i>Salmonella</i>.Proc Natl Acad Sci U S A2018
28554894Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells required for self-renewal.EMBO J2017
28122508Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast.BMC Genomics2017
29152581The <i>Candida albicans</i> TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation.mSphere2017
29048400CD10<sup>-</sup>/ALDH<sup>-</sup> cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.Cell Death Dis2017
29118973The 2017 Bioinformatics Open Source Conference (BOSC).F1000Res2017
28558017A dual-strategy expression screen for candidate connectivity labels in the developing thalamus.PLoS One2017
26914653The 2015 Bioinformatics Open Source Conference (BOSC 2015).PLoS Comput Biol2016
27781083The 2016 Bioinformatics Open Source Conference (BOSC).F1000Res2016
27564394The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.PLoS Genet2016
27527066microRNA regulatory circuits in a mouse model of inherited retinal degeneration.Sci Rep2016
25666134Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis.J Bacteriol2015
26631971Re-engineering cellular physiology by rewiring high-level global regulatory genes.Sci Rep2015
26561851RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium.PLoS Pathog2015
26498621Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools.Methods Mol Biol2015
26094870Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.FEBS J2015
25995365Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.Proc Natl Acad Sci U S A2015
25678762Gene expression changes during retinal development and rod specification.Mol Vis2015
25699042Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq.Front Immunol2015
24459278Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type SAGOXB.0066, Cause of a 2008 Pan-European Outbreak.Genome Announc2014
25206354RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis.Front Immunol2014
25356803Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits.PLoS Genet2014
25324841Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis.Front Immunol2014
24560702A transcription factor network coordinates attraction, repulsion, and adhesion combinatorially to control motor axon pathway selection.Neuron2014
24626166A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni.PLoS Pathog2014
  • 1 - 50 of 87

Recommended Authors

Matthew L Settles
University of California Davis Genome Center
Career Start Year 2008
Number of shared co-authors 1
Gang Fang
Icahn School of Medicine at Mount Sinai
Career Start Year 2005
Number of shared co-authors 5
Shannan J Ho Sui
Harvard T.H. Chan School of Public Health
Career Start Year 2004
Number of shared co-authors 9
Sarath Chandra Janga
Indiana University
Career Start Year 2004
Number of shared co-authors 0
Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 2004
Number of shared co-authors 13
Ricardo Z N V??ncio
University of Sao Paulo
Career Start Year 2003
Number of shared co-authors 3
Christine Vogel
Center for Genomics and Systems Biology, New York University
Career Start Year 2003
Number of shared co-authors 1
Vera van Noort
Leiden University, Institute of Biology Leiden
Career Start Year 2003
Number of shared co-authors 1
Harm van Bakel
Icahn School of Medicine at Mount Sinai
Career Start Year 2002
Number of shared co-authors 0
Anna C M Salim
Instituto Rene Rachou
Career Start Year 2001
Number of shared co-authors 0
Erliang Zeng
College of Dentistry, University of Iowa
Career Start Year 2001
Number of shared co-authors 1
Jeong-Hyeon Choi
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 7
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Career Start Year 2000
Number of shared co-authors 3
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Career Start Year 1998
Number of shared co-authors 3
David R Powell
Biomedicine Discovery Institute, Monash University
Career Start Year 1998
Number of shared co-authors 3
Sarah A Teichmann
Wellcome Sanger Institute
Career Start Year 1996
Number of shared co-authors 20
Jessica Severin
Center for Integrative Medical Sciences
Career Start Year 1996
Number of shared co-authors 7
Christopher T Workman
Technical University of Denmark
Career Start Year 1995
Number of shared co-authors 1
Terry Gaasterland
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 12
Ioannis Xenarios
University of Lausanne
Career Start Year 1994
Number of shared co-authors 9
John Parkinson
The Hospital for Sick Children
Career Start Year 1994
Number of shared co-authors 6
Jason E McDermott
Pacific Northwest National Laboratory
Career Start Year 1993
Number of shared co-authors 4
Bianca Habermann
Aix Marseille University, CNRS, Turing Center for Living Systems
Career Start Year 1993
Number of shared co-authors 3
Roger E Bumgarner
University of Washington
Career Start Year 1992
Number of shared co-authors 16
Mark Gerstein
Yale University
Career Start Year 1991
Number of shared co-authors 36
Miguel A Andrade-Navarro
Institute of Organismic and Molecular Evolution, Johannes Gutenberg University
Career Start Year 1991
Number of shared co-authors 3
Winston Hide
Harvard Medical School
Career Start Year 1991
Number of shared co-authors 14
Roderick V Jensen
Virginia Tech
Career Start Year 1985
Number of shared co-authors 0
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Career Start Year 1985
Number of shared co-authors 7
John S Mattick
Australia UNSW RNA Institute
Career Start Year 1951
Number of shared co-authors 27

Collaborators

Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 8
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 7
Fiona S L Brinkman
Simon Fraser University
Co-authored papers 7
Christopher J Fields
University of Illinois Urbana-Champaign
Co-authored papers 7
Robert E W Hancock
University of British Columbia
Co-authored papers 6
Peter J A Cock
James Hutton Institute
Co-authored papers 6
Aoife McLysaght
Smurfit Institute of Genetics, Trinity College Dublin
Co-authored papers 5
Darren J Fitzpatrick
Smurfit Institute of Genetics, Trinity College Dublin
Co-authored papers 5
Heather L Wiencko
Open Bioinformatics Foundation
Co-authored papers 5
Shane C Dillon
Co-authored papers 4
Brad A Chapman
Harvard T.H. Chan School of Public Health
Co-authored papers 4
Hilmar Lapp
Duke University
Co-authored papers 4
Adrian P Bracken
Smurfit Institute of Genetics, Trinity College Dublin
Co-authored papers 3
Bastian Greshake Tzovaras
Universite Paris Cite, Inserm
Co-authored papers 3
Deepak R Unni
Lawrence Berkeley National Laboratory
Co-authored papers 2
Gerard Cagney
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Co-authored papers 2
Giorgio Oliviero
University College Dublin
Co-authored papers 2
Kieran Wynne
University College Dublin
Co-authored papers 2
Ariane Watson
University College Dublin
Co-authored papers 2
Gundula Streubel
Smurfit Institute of Genetics, Trinity College Dublin
Co-authored papers 2
David J Lynn
South Australian Health and Medical Research Institute
Co-authored papers 2
Darran P O'Connor
UCD Conway Institute, University College Dublin
Co-authored papers 2
Chris Clee
Co-authored papers 1
Robert W Plumb
Co-authored papers 1
Michele Clamp
Harvard University
Co-authored papers 1
John Bouck
Baylor College of Medicine
Co-authored papers 1
Raju Kucherlapati
Harvard Medical School
Co-authored papers 1
David Kulp
Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard
Co-authored papers 1
Mark S Guyer
National Human Genome Research Institute
Co-authored papers 1
Malvika Sharan
The Alan Turing Institute
Co-authored papers 1
Release 1.2