Author details

Full Name

Ho-Ryun Chung

Affiliation

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37415213	Alterations in the hepatocyte epigenetic landscape in steatosis.	Epigenetics Chromatin	2023
37415213	Alterations in the hepatocyte epigenetic landscape in steatosis.	Epigenetics Chromatin	2023
34131132	Lasp1 regulates adherens junction dynamics and fibroblast transformation in destructive arthritis.	Nat Commun	2021
33751115	Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites.	Nucleic Acids Res	2021
33562308	C1q/TNF-Related Protein 3 (CTRP-3) Deficiency of Adipocytes Affects White Adipose Tissue Mass but Not Systemic CTRP-3 Concentrations.	Int J Mol Sci	2021
34131132	Lasp1 regulates adherens junction dynamics and fibroblast transformation in destructive arthritis.	Nat Commun	2021
34850108	Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.	Nucleic Acids Res	2021
33562308	C1q/TNF-Related Protein 3 (CTRP-3) Deficiency of Adipocytes Affects White Adipose Tissue Mass but Not Systemic CTRP-3 Concentrations.	Int J Mol Sci	2021
33751115	Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites.	Nucleic Acids Res	2021
34850108	Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.	Nucleic Acids Res	2021
32264931	EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.	Epigenetics Chromatin	2020
32264931	EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.	Epigenetics Chromatin	2020
31937263	Enhanced genome assembly and a new official gene set for Tribolium castaneum.	BMC Genomics	2020
31937263	Enhanced genome assembly and a new official gene set for Tribolium castaneum.	BMC Genomics	2020
31699133	CRUP: a comprehensive framework to predict condition-specific regulatory units.	Genome Biol	2019
31699133	CRUP: a comprehensive framework to predict condition-specific regulatory units.	Genome Biol	2019
29385519	Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.	Nucleic Acids Res	2018
30142147	coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.	PLoS Comput Biol	2018
29385519	Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.	Nucleic Acids Res	2018
29471333	Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.	Nucleic Acids Res	2018
30142147	coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.	PLoS Comput Biol	2018
29471333	Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.	Nucleic Acids Res	2018
26832418	Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs.	Cell Rep	2016
26832418	Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs.	Cell Rep	2016
27223324	PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3.	Elife	2016
27530917	reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells.	Nat Commun	2016
27851915	Epigenomic Profiling of Human CD4<sup>+</sup> T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development.	Immunity	2016
27851915	Epigenomic Profiling of Human CD4<sup>+</sup> T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development.	Immunity	2016
27530917	reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells.	Nat Commun	2016
27223324	PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3.	Elife	2016
25720775	ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.	Genome Res	2015
25720775	ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.	Genome Res	2015
26431028	High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila.	Mol Cell	2015
26260510	A link between Sas2-mediated H4 K16 acetylation, chromatin assembly in S-phase by CAF-I and Asf1, and nucleosome assembly by Spt6 during transcription.	FEMS Yeast Res	2015
26382429	Conditions for positioning of nucleosomes on DNA.	Phys Rev E Stat Nonlin Soft Matter Phys	2015
26206277	Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome.	Genome Biol	2015
26382429	Conditions for positioning of nucleosomes on DNA.	Phys Rev E Stat Nonlin Soft Matter Phys	2015
26431028	High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila.	Mol Cell	2015
26260510	A link between Sas2-mediated H4 K16 acetylation, chromatin assembly in S-phase by CAF-I and Asf1, and nucleosome assembly by Spt6 during transcription.	FEMS Yeast Res	2015
26206277	Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome.	Genome Biol	2015
25315429	Deletions of chromosomal regulatory boundaries are associated with congenital disease.	Genome Biol	2014
25414326	Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling.	Nucleic Acids Res	2014
25315429	Deletions of chromosomal regulatory boundaries are associated with congenital disease.	Genome Biol	2014
25414326	Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling.	Nucleic Acids Res	2014
23981350	Inferring nucleosome positions with their histone mark annotation from ChIP data.	Bioinformatics	2013
24039558	Finding associations among histone modifications using sparse partial correlation networks.	PLoS Comput Biol	2013
23981350	Inferring nucleosome positions with their histone mark annotation from ChIP data.	Bioinformatics	2013
24039558	Finding associations among histone modifications using sparse partial correlation networks.	PLoS Comput Biol	2013
21908408	Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange.	Nucleic Acids Res	2012
22302574	Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.	Bioinformatics	2012

1 - 50 of 84

Anthony Mathelier

University of Oslo

Career Start Year 2010

Number of shared co-authors 1

Michael J Guertin

Center for Cell Analysis and Modeling, University of Connecticut

Career Start Year 2010

Number of shared co-authors 0

Ivan V Kulakovskiy

Vavilov Institute of General Genetics, Russian Academy of Sciences

Career Start Year 2009

Number of shared co-authors 1

Alan P Boyle

University of Michigan ann arbor

Career Start Year 2008

Number of shared co-authors 1

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Ally Yang

University of Toronto

Career Start Year 2008

Number of shared co-authors 1

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 2

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Career Start Year 2006

Number of shared co-authors 0

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 4

Guillaume J Filion

University of Toronto Scarborough

Career Start Year 2004

Number of shared co-authors 0

Paul G Giresi

Center for Personal Dynamic Regulomes

Career Start Year 2003

Number of shared co-authors 2

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 3

Peter J Park

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 7

Guo-Cheng Yuan

Dana-Farber Cancer Institute, Harvard School of Public Health

Career Start Year 2000

Number of shared co-authors 2

Benjamin P Berman

Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem

Career Start Year 2000

Number of shared co-authors 2

Michael Y Tolstorukov

Dana-Farber Cancer Institute

Career Start Year 2000

Number of shared co-authors 2

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 0

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Career Start Year 1999

Number of shared co-authors 5

Boris Lenhard

MRC London Institute of Medical Sciences

Career Start Year 1996

Number of shared co-authors 3

Jason D Lieb

The University of Chicago

Career Start Year 1996

Number of shared co-authors 5

Colin Logie

Radboud Institute for Molecular Science, Radboud University

Career Start Year 1995

Number of shared co-authors 1

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 8

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 3

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 3

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 3

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Career Start Year 1992

Number of shared co-authors 5

Bas van Steensel

Oncode Institute, Netherlands Cancer Institute

Career Start Year 1991

Number of shared co-authors 4

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 3

row(s) 1 - 30 of 30

JÃ¶rn Walter

Co-authored papers 4

Nina Gasparoni

Co-authored papers 4

Xinyi Yang

Co-authored papers 4

Michael I Love

University of North Carolina at Chapel Hill

Co-authored papers 4

Gilles Gasparoni

Co-authored papers 4

Philip Rosenstiel

Co-authored papers 3

Karl NordstrÃ¶m

Co-authored papers 3

Thomas Pap

Co-authored papers 2

Jonas Ibn-Salem

Max-Planck Institute for Molecular Genetics, Johannes Gutenberg University of Mainz

Co-authored papers 2

Tomasz Zemojtel

Berlin Institute of Health (BIH)

Co-authored papers 2

Rosa Karlic

University of Zagreb

Co-authored papers 1

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 1

Anja RÃ¶mer-Hillmann

Co-authored papers 1

Sebastian Bauer

Institute for Medical Genetics and Human Genetics, Charite-Universitatsmedizin Berlin

Co-authored papers 1

Lars Feuerbach

German Cancer Research Center (DKFZ)

Co-authored papers 1

Ni Huang

Washington University School of Medicine

Co-authored papers 1