Skip to Main Content

Author Details

Carson M Andorf
USDA-ARS, Corn Insects and Crop Genetics Research Unit
2005
36
19
PMIDPaper TitleJournal TitlePublished Year
36755109Maize protein structure resources at the maize genetics and genomics database.Genetics2023
37935586Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications.Database (Oxford)2023
35997208Association mapping across a multitude of traits collected in diverse environments in maize.Gigascience2022
35719692Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach.Front Artif Intell2022
36529716Co-expression pan-network reveals genes involved in complex traits within maize pan-genome.BMC Plant Biol2022
34353948De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.Science2021
33879057FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.BMC Bioinformatics2021
34406385qTeller: a tool for comparative multi-genomic gene expression analysis.Bioinformatics2021
34416864A pan-genomic approach to genome databases using maize as a model system.BMC Plant Biol2021
32122303GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations.BMC Genomics2020
31900107Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize.BMC Plant Biol2020
31749017Haplotype structure in commercial maize breeding programs in relation to key founder lines.Theor Appl Genet2020
33193550MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.Front Plant Sci2020
30407532MaizeGDB 2018: the maize multi-genome genetics and genomics database.Nucleic Acids Res2019
31555312MaizeDIG: Maize Database of Images and Genomes.Front Plant Sci2019
30798332Technological advances in maize breeding: past, present and future.Theor Appl Genet2019
30903182PedigreeNet: a web-based pedigree viewer for biological databases.Bioinformatics2019
29688387SNPversity: a web-based tool for visualizing diversity.Database (Oxford)2018
30239679AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database (Oxford)2018
30061736The maize W22 genome provides a foundation for functional genomics and transposon biology.Nat Genet2018
30059508Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning.PLoS Comput Biol2018
31245718Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER).Plant Direct2018
28605768Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.Database (Oxford)2017
26519406MaizeGDB: The Maize Genetics and Genomics Database.Methods Mol Biol2016
26432828MaizeGDB update: new tools, data and interface for the maize model organism database.Nucleic Acids Res2016
25384563Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.Plant Physiol2015
25527104G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation.J Genet Genomics2014
23431393Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks.PLoS One2013
21565781The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video.Database (Oxford)2011
22253616POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.Int J Plant Genomics2011
21624896MaizeGDB: curation and outreach go hand-in-hand.Database (Oxford)2011
20124413The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.Bioinformatics2010
20627860Choosing a genome browser for a Model Organism Database: surveying the maize community.Database (Oxford)2010
21847242MaizeGDB becomes 'sequence-centric'.Database (Oxford)2009
17683567Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.BMC Bioinformatics2007
20802821Information Integration from Semantically Heterogeneous Biological Data Sources.Int Workshop databases Expert Syst Appl2005
  • 1 - 36 of 36

Recommended Authors

Career Start Year 2017
Number of shared co-authors 4
Western Regional Research Center, Crop Improvement and Genetics Research Unit
Career Start Year 2016
Number of shared co-authors 9
The Ohio State University
Career Start Year 2012
Number of shared co-authors 0
Institute for Information Transmission Problems of the Russian Academy of Sciences
Career Start Year 2011
Number of shared co-authors 1
Oregon State University
Career Start Year 2011
Number of shared co-authors 15
Earlham Institute
Career Start Year 2007
Number of shared co-authors 4
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Career Start Year 2007
Number of shared co-authors 1
Ghent University
Career Start Year 2005
Number of shared co-authors 0
Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
Career Start Year 2005
Number of shared co-authors 8
Johns Hopkins University
Career Start Year 2004
Number of shared co-authors 4
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 2
National Center for Biotechnology Information, National Institutes of Health
Career Start Year 2003
Number of shared co-authors 6
The Pennsylvania State University College of Medicine
Career Start Year 2002
Number of shared co-authors 3
Indiana University
Career Start Year 2002
Number of shared co-authors 6
Center for Quantitative Life Sciences, Oregon State University
Career Start Year 2002
Number of shared co-authors 3
Wageningen University & Research
Career Start Year 2001
Number of shared co-authors 0
Universitat de Barcelona (UB)
Career Start Year 2001
Number of shared co-authors 4
Boyce Thompson Institute (BTI)
Career Start Year 2000
Number of shared co-authors 15
Minnesota Supercomputing Institute, University of Minnesota
Career Start Year 2000
Number of shared co-authors 9
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 2
University of California davis
Career Start Year 1998
Number of shared co-authors 4
Institute for Integrative Genome Biology, University of California Riverside
Career Start Year 1998
Number of shared co-authors 0
University of California Riverside
Career Start Year 1996
Number of shared co-authors 4
Delphinai Corporation
Career Start Year 1996
Number of shared co-authors 7
University of North Carolina
Career Start Year 1995
Number of shared co-authors 4
European Bioinformatics Institute
Career Start Year 1995
Number of shared co-authors 13
Carnegie Institution for Science
Career Start Year 1992
Number of shared co-authors 10
Ontario Institute for Cancer Research, University Avenue
Career Start Year 1986
Number of shared co-authors 13
Norwegian University of Science and Technology
Career Start Year 1983
Number of shared co-authors 3
Broad Institute of MIT and Harvard
Career Start Year 1981
Number of shared co-authors 2

Collaborators

USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center
Co-authored papers 17
Corn Insects and Crop Genetics Research Unit, USDA Agricultural Research Service
Co-authored papers 14
Iowa State University
Co-authored papers 14
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 13
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 13
University of Missouri
Co-authored papers 10
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 4
Co-authored papers 3
University of Missouri
Co-authored papers 3
Iowa State University
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 2
State University of New York at Old Westbury
Co-authored papers 2
East Carolina University
Co-authored papers 1
Iowa State University
Co-authored papers 1
USDA-Agricultural Research Service
Co-authored papers 1
USDA-ARS Corn Insects and Crop Genetics Research Unit
Co-authored papers 1
USDA, Corn Insects and Crop Genetics Research Unit, Iowa State University
Co-authored papers 1
Washington State University
Co-authored papers 1
Washington State University
Co-authored papers 1
Oregon State University
Co-authored papers 1
University Montpellier
Co-authored papers 1
Center for Genomics-Enabled Plant Science, Michigan State University
Co-authored papers 1
National Center for Genome Resources
Co-authored papers 1
University of Montpellier, CNRS
Co-authored papers 1
University of Utah
Co-authored papers 1
Washington State University
Co-authored papers 1
University of Tennessee
Co-authored papers 1
University of Georgia
Co-authored papers 1
University of Connecticut
Co-authored papers 1
Iowa State University
Co-authored papers 1