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Author Details

Anna Goldenberg
SickKids Research Institute
2011
60
23
Antoine Forget (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36694664Differential Expression Enrichment Tool (DEET): an interactive atlas of human differential gene expression.NAR Genom Bioinform2023
37377903Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome.Cancer Res Commun2023
36967863Screening and intervention for intimate partner violence at trauma centers and emergency departments: an evidence-based systematic review from the Eastern Association for the Surgery of Trauma.Trauma Surg Acute Care Open2023
34626159The Toronto Postliver Transplantation Hepatocellular Carcinoma Recurrence Calculator: A Machine Learning Approach.Liver Transpl2022
35817953The promise of machine learning applications in solid organ transplantation.NPJ Digit Med2022
36221127Postnatal developmental trajectory of sex-biased gene expression in the mouse pituitary gland.Biol Sex Differ2022
30335690Pediatric Major Vascular Injuries: A 16-Year Institutional Experience From a Combined Adult and Pediatric Trauma Center.Pediatr Emerg Care2021
33655208Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes.NAR Genom Bioinform2021
33892787Finding associations in a heterogeneous setting: statistical test for aberration enrichment.Genome Med2021
34788078Assessing therapy response in patient-derived xenografts.Sci Transl Med2021
33168947Integration of brain and behavior measures for identification of data-driven groups cutting across children with ASD, ADHD, or OCD.Neuropsychopharmacology2021
31624126Biological embedding of experience: A primer on epigenetics.Proc Natl Acad Sci U S A2020
31907954Applying Machine Learning in Liver Disease and Transplantation: A Comprehensive Review.Hepatology2020
33057217Transparency and reproducibility in artificial intelligence.Nature2020
32188719A quantitative super-resolution imaging toolbox for diagnosis of motile ciliopathies.Sci Transl Med2020
32304563Authors' reply: Use of ShotSpotter detection technology decreases prehospital time for patients sustaining gunshot wounds.J Trauma Acute Care Surg2020
32566759Machine learning approaches to drug response prediction: challenges and recent progress.NPJ Precis Oncol2020
30467459Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.Inf Fusion2019
31664194Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma.Nature2019
31427808Do no harm: a roadmap for responsible machine learning for health care.Nat Med2019
31425474Use of ShotSpotter detection technology decreases prehospital time for patients sustaining gunshot wounds.J Trauma Acute Care Surg2019
31537911Author Correction: Do no harm: a roadmap for responsible machine learning for health care.Nat Med2019
30978600Determining Trajectory to Predict Injury: The Use of X-Ray During Resuscitation in Gunshot Wounds.J Surg Res2019
31118945To Embed or Not: Network Embedding as a Paradigm in Computational Biology.Front Genet2019
31142512Integrative Pharmacogenomics Analysis of Patient-Derived Xenografts.Cancer Res2019
30850846Dr.VAE: improving drug response prediction via modeling of drug perturbation effects.Bioinformatics2019
30607709PPAR and GST polymorphisms may predict changes in intellectual functioning in medulloblastoma survivors.J Neurooncol2019
29105664Brain-Behavior Participant Similarity Networks Among Youth and Emerging Adults with Schizophrenia Spectrum, Autism Spectrum, or Bipolar Disorder and Matched Controls.Neuropsychopharmacology2018
30429608Sensitive tumour detection and classification using plasma cell-free DNA methylomes.Nature2018
29474917Learning from Everyday Images Enables Expert-like Diagnosis of Retinal Diseases.Cell2018
29692205Integration of DNA methylation & health scores identifies subtypes in myalgic encephalomyelitis/chronic fatigue syndrome.Epigenomics2018
29622295Similarity Network Fusion: A Novel Application to Making Clinical Diagnoses.Rheum Dis Clin North Am2018
28867603Molecular Signatures for Tumor Classification: An Analysis of The Cancer Genome Atlas Data.J Mol Diagn2017
28314784Integrative Cancer Pharmacogenomics to Infer Large-Scale Drug Taxonomy.Cancer Res2017
28429467Conditional random slope: A new approach for estimating individual child growth velocity in epidemiological research.Am J Hum Biol2017
28099379Systemic intraoperative anticoagulation during arterial injury repair: Implications for patency and bleeding.J Trauma Acute Care Surg2017
28960198The inconvenience of data of convenience: computational research beyond post-mortem analyses.Nat Methods2017
29023470Vicus: Exploiting local structures to improve network-based analysis of biological data.PLoS Comput Biol2017
29023450Incorporating networks in a probabilistic graphical model to find drivers for complex human diseases.PLoS Comput Biol2017
28700413Venous thromboembolism after major venous injuries: Competing priorities.J Trauma Acute Care Surg2017
28911201Gene expression profiling of puberty-associated genes reveals abundant tissue and sex-specific changes across postnatal development.Hum Mol Genet2017
28609654Intertumoral Heterogeneity within Medulloblastoma Subgroups.Cancer Cell2017
26698568Sex-specific regulation of weight and puberty by the Lin28/let-7 axis.J Endocrinol2016
26411870JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.Bioinformatics2016
26656004PharmacoGx: an R package for analysis of large pharmacogenomic datasets.Bioinformatics2016
27905430Safikhani et al. reply.Nature2016
27905423Safikhani et al. reply.Nature2016
27905416Safikhani et al. reply.Nature2016
27721464Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.Nat Commun2016
27136685TensorFlow: Biology's Gateway to Deep Learning?Cell Syst2016
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Collaborators

Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 12
Lauren Erdman
Center for Computational Medicine, Hospital for Sick Children Research Institute
Co-authored papers 9
Zhaleh Safikhani
Princess Margaret Cancer Center, University Health Network
Co-authored papers 7
Quaid Morris
Sloan Kettering Institute
Co-authored papers 6
Hugo J W L Aerts
Harvard Medical School
Co-authored papers 6
Nehme El-Hachem
Centre Hospitalier Universitaire Sainte-Justine Research Centre
Co-authored papers 6
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 5
Sara Mostafavi
University of British Columbia and BC Children's Hospital
Co-authored papers 4
Michael D Wilson
SickKids Research Institute
Co-authored papers 4
Andrew H Beck
Beth Israel Deaconess Medical Center, Harvard Medical School
Co-authored papers 4
Vijay Ramaswamy
Hospital for Sick Children
Co-authored papers 3
Gary D Bader
University of Toronto
Co-authored papers 3
Michael M Hoffman
University of Toronto
Co-authored papers 3
David Malkin
Hospital for Sick Children
Co-authored papers 3
Michael D Taylor
The Hospital for Sick Children
Co-authored papers 3
Michael Brudno
University of Toronto
Co-authored papers 3
Claudia C Faria
Hospital de Santa Maria, Centro Hospitalar Universitario Lisboa Norte (CHULN)
Co-authored papers 2
Finale Doshi-Velez
Harvard University
Co-authored papers 2
Anshul Kundaje
Stanford University.
Co-authored papers 2
Betty Luu
University of Wollongong
Co-authored papers 2
Stephen H Friend
University of Oxford
Co-authored papers 2
Toshihiro Kumabe
Kitasato University School of Medicine
Co-authored papers 2
Pim J French
Erasmus MC Cancer Institute
Co-authored papers 2
Marzyeh Ghassemi
3Vector Institute
Co-authored papers 2
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 2
Erwin G Van Meir
Heersink School of Medicine, University of Alabama at Birmingham
Co-authored papers 2
James M Olson
Clinical Research Division, Fred Hutchinson Cancer Center
Co-authored papers 2
Anne Jouvet
Groupement Hospitalier EST, Universite de Lyon
Co-authored papers 2
Liis Uusk??la-Reimand
SickKids Research Institute
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Mark J Seamon
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Release 1.2