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Author Details

Nathalie Pochet
Broad Institute of MIT and Harvard
2004
50
28
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37175706Defective Induction of IL-27-Mediated Immunoregulation by Myeloid DCs in Multiple Sclerosis.Int J Mol Sci2023
37175706Defective Induction of IL-27-Mediated Immunoregulation by Myeloid DCs in Multiple Sclerosis.Int J Mol Sci2023
35801591Hepatocellular carcinoma chemoprevention by targeting the angiotensin-converting enzyme and EGFR transactivation.JCI Insight2022
35801591Hepatocellular carcinoma chemoprevention by targeting the angiotensin-converting enzyme and EGFR transactivation.JCI Insight2022
34290079Hepatitis B virus compartmentalization and single-cell differentiation in hepatocellular carcinoma.Life Sci Alliance2021
34290079Hepatitis B virus compartmentalization and single-cell differentiation in hepatocellular carcinoma.Life Sci Alliance2021
34535664A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery.Nat Commun2021
34535664A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery.Nat Commun2021
32383980Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.JCO Clin Cancer Inform2020
32383980Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.JCO Clin Cancer Inform2020
33203678Aberrant expression of USF2 in refractory rheumatoid arthritis and its regulation of proinflammatory cytokines in Th17 cells.Proc Natl Acad Sci U S A2020
32668241Checkpoint Receptor TIGIT Expressed on Tim-1<sup>+</sup> B Cells Regulates Tissue Inflammation.Cell Rep2020
33203678Aberrant expression of USF2 in refractory rheumatoid arthritis and its regulation of proinflammatory cytokines in Th17 cells.Proc Natl Acad Sci U S A2020
32668241Checkpoint Receptor TIGIT Expressed on Tim-1<sup>+</sup> B Cells Regulates Tissue Inflammation.Cell Rep2020
30978357Combined Analysis of Metabolomes, Proteomes, and Transcriptomes of Hepatitis C Virus-Infected Cells and Liver to Identify Pathways Associated With Disease Development.Gastroenterology2019
31639029Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.Genome Biol2019
30978357Combined Analysis of Metabolomes, Proteomes, and Transcriptomes of Hepatitis C Virus-Infected Cells and Liver to Identify Pathways Associated With Disease Development.Gastroenterology2019
31192222Complex Neurological Phenotype in Female Carriers of <i>NHE6</i> Mutations.Mol Neuropsychiatry2019
31639029Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.Genome Biol2019
31192222Complex Neurological Phenotype in Female Carriers of <i>NHE6</i> Mutations.Mol Neuropsychiatry2019
29331675Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response.EBioMedicine2018
30458705Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses.BMC Genomics2018
29331675Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response.EBioMedicine2018
29679386Hepatitis B Virus Evasion From Cyclic Guanosine Monophosphate-Adenosine Monophosphate Synthase Sensing in Human Hepatocytes.Hepatology2018
28159835miR-135a-5p-mediated downregulation of protein tyrosine phosphatase receptor delta is a candidate driver of HCV-associated hepatocarcinogenesis.Gut2018
30458705Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses.BMC Genomics2018
28159835miR-135a-5p-mediated downregulation of protein tyrosine phosphatase receptor delta is a candidate driver of HCV-associated hepatocarcinogenesis.Gut2018
29679386Hepatitis B Virus Evasion From Cyclic Guanosine Monophosphate-Adenosine Monophosphate Synthase Sensing in Human Hepatocytes.Hepatology2018
28668092Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer's disease.Mol Neurodegener2017
28668092Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer's disease.Mol Neurodegener2017
29150604Transcriptional signature of human pro-inflammatory T<sub>H</sub>17 cells identifies reduced IL10 gene expression in multiple sclerosis.Nat Commun2017
29150604Transcriptional signature of human pro-inflammatory T<sub>H</sub>17 cells identifies reduced IL10 gene expression in multiple sclerosis.Nat Commun2017
26224662A targeted functional RNA interference screen uncovers glypican 5 as an entry factor for hepatitis B and D viruses.Hepatology2016
26780094Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Nat Methods2016
27158906Type I interferons and microbial metabolites of tryptophan modulate astrocyte activity and central nervous system inflammation via the aryl hydrocarbon receptor.Nat Med2016
26224662A targeted functional RNA interference screen uncovers glypican 5 as an entry factor for hepatitis B and D viruses.Hepatology2016
26410623High-throughput approaches to unravel hepatitis C virus-host interactions.Virus Res2016
26410623High-throughput approaches to unravel hepatitis C virus-host interactions.Virus Res2016
27158906Type I interferons and microbial metabolites of tryptophan modulate astrocyte activity and central nervous system inflammation via the aryl hydrocarbon receptor.Nat Med2016
26780094Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Nat Methods2016
25381879Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice.Ann Neurol2015
25365775Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease.JAMA Neurol2015
25381879Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice.Ann Neurol2015
26644347Identification and characterization of latency-associated peptide-expressing γδ T cells.Nat Commun2015
26644347Identification and characterization of latency-associated peptide-expressing γδ T cells.Nat Commun2015
25365775Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease.JAMA Neurol2015
24778153Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL.Blood2014
24778153Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL.Blood2014
23396133Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.Nat Genet2013
23845962De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.Nat Protoc2013
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Collaborators

Broad Institute of MIT and Harvard
Co-authored papers 13
STADIUS Center for Dynamical Systems
Co-authored papers 10
Netherlands Cancer Institute
Co-authored papers 9
Co-authored papers 6
University of California San Diego
Co-authored papers 4
Co-authored papers 4
Co-authored papers 3
Co-authored papers 3
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 3
Columbia University Medical Center
Co-authored papers 3
Broad Institute of MIT and Harvard
Co-authored papers 3
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 3
Massachusetts General Hospital and Harvard Medical School
Co-authored papers 2
The Center for Genome Architecture, Baylor College of Medicine
Co-authored papers 2
Co-authored papers 2
The Broad Institute of Harvard and MIT
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Moores Cancer Center, University of California San Diego
Co-authored papers 2
The Broad Institute
Co-authored papers 2
University of California San Diego
Co-authored papers 2
Massachusetts General Hospital
Co-authored papers 2
Co-authored papers 2
Rush University Medical Center
Co-authored papers 2
Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
University of California San Diego
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Weizmann Institute of Science
Co-authored papers 1