Author details

Full Name

Colin Logie

Affiliation

Radboud Institute for Molecular Science, Radboud University

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36866529	The Gene Ontology knowledgebase in 2023.	Genetics	2023
37796452	Corticosteroid-induced chromatin loop dynamics at the FKBP5 gene.	Ann N Y Acad Sci	2023
36973556	Quantification of absolute transcription factor binding affinities in the native chromatin context using BANC-seq.	Nat Biotechnol	2023
34923188	From why to how; The gene expression knowledge commons.	Biochim Biophys Acta Gene Regul Mech	2022
33276199	Fibronectin-functionalization of 3D collagen networks supports immune tolerance and inflammation suppression in human monocyte-derived macrophages.	Biomaterials	2021
34877501	Retinoic acid signaling drives differentiation toward the absorptive lineage in colorectal cancer.	iScience	2021
34710644	Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.	Biochim Biophys Acta Gene Regul Mech	2021
34673265	A GO catalogue of human DNA-binding transcription factors.	Biochim Biophys Acta Gene Regul Mech	2021
34461313	Gene Ontology representation for transcription factor functions.	Biochim Biophys Acta Gene Regul Mech	2021
34425241	Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes.	Biochim Biophys Acta Gene Regul Mech	2021
34389511	Sequence Ontology terminology for gene regulation.	Biochim Biophys Acta Gene Regul Mech	2021
32782014	Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries.	Genome Biol	2020
31022214	Underreported and unknown student harassment at the Faculty of Science.	PLoS One	2019
31199668	The alarmin S100A9 hampers osteoclast differentiation from human circulating precursors by reducing the expression of RANK.	FASEB J	2019
30809020	Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages.	Sci Rep	2019
31097792	Publisher Correction: Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency.	Nat Cell Biol	2019
31036938	Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency.	Nat Cell Biol	2019
29222071	HDAC11 is a regulator of diverse immune functions.	Biochim Biophys Acta Gene Regul Mech	2018
29988341	Dendritic Cells Actively Limit Interleukin-10 Production Under Inflammatory Conditions <i>via</i> DC-SCRIPT and Dual-Specificity Phosphatase 4.	Front Immunol	2018
29876014	Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia.	Oncotarget	2018
29876013	Combined HAT/EZH2 modulation leads to cancer-selective cell death.	Oncotarget	2018
30566872	Mutant p63 Affects Epidermal Cell Identity through Rewiring the Enhancer Landscape.	Cell Rep	2018
28813650	We Can Still Be Friends: IFN-Î³ Breaks Up Macrophage Enhancers.	Immunity	2017
28144824	Cellular reprogramming for clinical cartilage repair.	Cell Biol Toxicol	2017
27424188	Epigenetic memory: A macrophage perspective.	Semin Immunol	2016
27866838	Glutaminolysis and Fumarate Accumulation Integrate Immunometabolic and Epigenetic Programs in Trained Immunity.	Cell Metab	2016
27863248	Î²-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance.	Cell	2016
26619937	Glucocorticoid receptor and nuclear factor kappa-b affect three-dimensional chromatin organization.	Genome Biol	2015
25258085	Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity.	Science	2014
22442726	SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes.	PLoS One	2012
22908247	Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy.	Proc Natl Acad Sci U S A	2012
22901542	Candida albicans infection affords protection against reinfection via functional reprogramming of monocytes.	Cell Host Microbe	2012
22923494	Chromatin accessibility, p300, and histone acetylation define PML-RARÎ± and AML1-ETO binding sites in acute myeloid leukemia.	Blood	2012
21245861	Genome-wide functions of PML-RARÎ± in acute promyelocytic leukaemia.	Br J Cancer	2011
21782046	The human histone H3 complement anno 2011.	Biochim Biophys Acta	2011
21941622	The decade of the epigenomes?	Genes Cancer	2011
21980132	Death receptor pathway activation and increase of ROS production by the triple epigenetic inhibitor UVI5008.	Mol Cancer Ther	2011
20520775	Histone H3 serine 57 and lysine 56 interplay in transcription elongation and recovery from S-phase stress.	PLoS One	2010
19153600	Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes.	EMBO J	2009
19626125	Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence.	PLoS One	2009
19377481	Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber.	Nat Struct Mol Biol	2009
18384725	Identification of potentially hazardous human gene products in GMO risk assessment.	Environ Biosafety Res	2008
18535655	Genetic identification of a network of factors that functionally interact with the nucleosome remodeling ATPase ISWI.	PLoS Genet	2008
18250149	dCHD3, a novel ATP-dependent chromatin remodeler associated with sites of active transcription.	Mol Cell Biol	2008
17395283	The ins and outs of ATP-dependent chromatin remodeling in budding yeast: biophysical and proteomic perspectives.	Biochim Biophys Acta	2007
17542652	Reverse genetic analysis of the yeast RSC chromatin remodeler reveals a role for RSC3 and SNF5 homolog 1 in ploidy maintenance.	PLoS Genet	2007
17609864	Single-pair FRET microscopy reveals mononucleosome dynamics.	J Fluoresc	2007
17442611	The new frontier in cancer research: deciphering cancer epigenetics.	Int J Biochem Cell Biol	2007
16809761	A feed-forward repression mechanism anchors the Sin3/histone deacetylase and N-CoR/SMRT corepressors on chromatin.	Mol Cell Biol	2006
17172838	Histone H3 lysine 56 acetylation: a new twist in the chromosome cycle.	Cell Cycle	2006

1 - 50 of 65

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 1

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 0

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Career Start Year 2006

Number of shared co-authors 0

J Peter Svensson

Karolinska Institutet

Career Start Year 2005

Number of shared co-authors 0

Guillaume J Filion

University of Toronto Scarborough

Career Start Year 2004

Number of shared co-authors 1

Paul G Giresi

Center for Personal Dynamic Regulomes

Career Start Year 2003

Number of shared co-authors 1

Cheng-Fu Kao

Institute of Cellular and Organismic Biology

Career Start Year 2003

Number of shared co-authors 1

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Career Start Year 2003

Number of shared co-authors 0

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 1

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 0

Siavash K Kurdistani

David Geffen School of Medicine, University of California los angeles

Career Start Year 1998

Number of shared co-authors 0

Zhiguo Zhang

Institute for Cancer Genetics, Columbia University Irving Medical Center

Career Start Year 1997

Number of shared co-authors 1

Michael-Christopher Keogh

EpiCypher Inc.

Career Start Year 1997

Number of shared co-authors 0

Brian D Strahl

University of North Carolina

Career Start Year 1996

Number of shared co-authors 4

Jason D Lieb

The University of Chicago

Career Start Year 1996

Number of shared co-authors 2

Fran??ois Robert

Institut de recherches cliniques de Montreal

Career Start Year 1996

Number of shared co-authors 0

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 6

Vishwanath R Iyer

Indian Institute of Technology Bombay

Career Start Year 1995

Number of shared co-authors 1

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 0

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 2

Timothy R Hughes

University of Toronto

Career Start Year 1992

Number of shared co-authors 6

Ali Shilatifard

Northwestern University Feinberg School of Medicine

Career Start Year 1991

Number of shared co-authors 5

Sam John

National Cancer Institute

Career Start Year 1990

Number of shared co-authors 0

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 5

Song Tan

Penn State University, University Park

Career Start Year 1988

Number of shared co-authors 0

Jacques C??t??

Centre Hospitalier Universitaire (CHU) de Quebec-Universite Laval Research Center

Career Start Year 1987

Number of shared co-authors 1

Danny Reinberg

HHMI/NYU Langone School of Medicine

Career Start Year 1980

Number of shared co-authors 4

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 5

row(s) 1 - 30 of 30

Hendrik G Stunnenberg

Co-authored papers 22

Joost H A Martens

Co-authored papers 10

Craig L Peterson

Co-authored papers 9

Ruth C Lovering

University College London, Institute for Cardiovascular Science

Co-authored papers 5

Pascale Gaudet

University of Geneva

Co-authored papers 4

Adrian Francis Stewart

Center for Molecular and Cellular Bioengineering, Technische Universitat Dresden

Co-authored papers 4

Simon Heath

Barcelona Institute of Science and Technology (BIST)

Co-authored papers 3

Ivo Gut

Spain Universitat de Barcelona (UB)

Co-authored papers 3

Astrid Laegreid

Norwegian University of Science and Technology

Co-authored papers 3

Martin Kuiper

Norwegian University of Science and Technology

Co-authored papers 3

Paul Flicek

European Bioinformatics Institute

Co-authored papers 3

Ramnik J Xavier

Broad Institute of MIT and Harvard

Co-authored papers 3

Maria J Martin

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Laura Clarke

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

Ina Poser

Max Planck Institute of Molecular Cell Biology and Genetics

Co-authored papers 2

Paul D Thomas

University of Southern California

Co-authored papers 2

Cisca Wijmenga

Co-authored papers 2

Sandra Orchard

EMBL's European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2