Author details

Full Name

Andrey Sivachenko

Affiliation

Cystic Fibrosis Foundation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Jake Y. Chen (CM4AI)

PMID	Paper Title	Journal Title	Published Year
30563749	Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells.	J Cyst Fibros	2019
30563749	Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells.	J Cyst Fibros	2019
24498085	A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events.	PLoS One	2014
25512523	Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma.	Proc Natl Acad Sci U S A	2014
24323028	Integrative and comparative genomic analysis of lung squamous cell carcinomas in East Asian patients.	J Clin Oncol	2014
24498085	A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events.	PLoS One	2014
24816817	Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.	PLoS One	2014
25186949	The genomic landscape of pediatric Ewing sarcoma.	Cancer Discov	2014
24836576	Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.	Nat Med	2014
24695405	PRADA: pipeline for RNA sequencing data analysis.	Bioinformatics	2014
25512523	Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma.	Proc Natl Acad Sci U S A	2014
25186949	The genomic landscape of pediatric Ewing sarcoma.	Cancer Discov	2014
24836576	Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.	Nat Med	2014
24816817	Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.	PLoS One	2014
24695405	PRADA: pipeline for RNA sequencing data analysis.	Bioinformatics	2014
24323028	Integrative and comparative genomic analysis of lung squamous cell carcinomas in East Asian patients.	J Clin Oncol	2014
23334666	The genetic landscape of high-risk neuroblastoma.	Nat Genet	2013
23770567	Mutational heterogeneity in cancer and the search for new cancer-associated genes.	Nature	2013
24185511	Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.	Nat Genet	2013
23786770	Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma.	Cancer Res	2013
23685885	Comparative analysis of RNA sequencing methods for degraded or low-input samples.	Nat Methods	2013
23396013	Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.	Nat Biotechnol	2013
23525077	Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.	Nat Genet	2013
23622249	Punctuated evolution of prostate cancer genomes.	Cell	2013
23415222	Evolution and impact of subclonal mutations in chronic lymphocytic leukemia.	Cell	2013
23334666	The genetic landscape of high-risk neuroblastoma.	Nat Genet	2013
24185511	Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.	Nat Genet	2013
23685885	Comparative analysis of RNA sequencing methods for degraded or low-input samples.	Nat Methods	2013
23622249	Punctuated evolution of prostate cancer genomes.	Cell	2013
23770567	Mutational heterogeneity in cancer and the search for new cancer-associated genes.	Nature	2013
23786770	Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma.	Cancer Res	2013
23396013	Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.	Nat Biotechnol	2013
23415222	Evolution and impact of subclonal mutations in chronic lymphocytic leukemia.	Cell	2013
23525077	Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.	Nat Genet	2013
22610119	Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer.	Nat Genet	2012
22539670	RNA-SeQC: RNA-seq metrics for quality control and process optimization.	Bioinformatics	2012
22622578	Melanoma genome sequencing reveals frequent PREX2 mutations.	Nature	2012
22722202	Sequence analysis of mutations and translocations across breast cancer subtypes.	Nature	2012
22820256	Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations.	Nature	2012
22610119	Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer.	Nat Genet	2012
22817889	A landscape of driver mutations in melanoma.	Cell	2012
22980975	Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.	Cell	2012
22980975	Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.	Cell	2012
22722202	Sequence analysis of mutations and translocations across breast cancer subtypes.	Nature	2012
22820256	Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations.	Nature	2012
22817889	A landscape of driver mutations in melanoma.	Cell	2012
22539670	RNA-SeQC: RNA-seq metrics for quality control and process optimization.	Bioinformatics	2012
22622578	Melanoma genome sequencing reveals frequent PREX2 mutations.	Nature	2012
21478889	A framework for variation discovery and genotyping using next-generation DNA sequencing data.	Nat Genet	2011
21307934	The genomic complexity of primary human prostate cancer.	Nature	2011

1 - 50 of 80

Zichen Wang

Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 2

J??ri Reimand

Ontario Institute for Cancer Research

Career Start Year 2007

Number of shared co-authors 19

Atanas Kamburov

Broad Institute of Harvard and MIT

Career Start Year 2007

Number of shared co-authors 16

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 2

Sara J C Gosline

Pacific Northwest National Laboratory (PNNL)

Career Start Year 2006

Number of shared co-authors 3

Andrey Alexeyenko

Karolinska Institutet

Career Start Year 2006

Number of shared co-authors 4

Hai Fang

University of Bristol

Career Start Year 2006

Number of shared co-authors 1

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 5

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 7

Bing Zhang

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 1

Adam A Margolin

Icahn School of Medicine

Career Start Year 2004

Number of shared co-authors 22

Kai Wang

Pfizer Inc.

Career Start Year 2004

Number of shared co-authors 0

F??tima Al-Shahrour

Spanish National Cancer Research Centre (CNIO)

Career Start Year 2003

Number of shared co-authors 9

Max Kotlyar

Schroeder Arthritis Institute

Career Start Year 2002

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 5

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 6

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 20

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 36

Tero Aittokallio

Institute for Molecular Medicine Finland (FIMM), University of Helsinki

Career Start Year 1999

Number of shared co-authors 5

Celine Lefebvre

The Scripps Research Institute

Career Start Year 1999

Number of shared co-authors 2

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 1998

Number of shared co-authors 3

Guanming Wu

Oregon Health and Science University

Career Start Year 1998

Number of shared co-authors 4

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 4

Benedikt Brors

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 20

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 20

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 2

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 24

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 6

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 0

row(s) 1 - 30 of 30

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Co-authored papers 27

Kristian Cibulskis

Co-authored papers 24

Michael S Lawrence

Co-authored papers 23

Stacey Gabriel

Broad Institute of MIT and Harvard

Co-authored papers 22

Matthew Meyerson

Broad Institute

Co-authored papers 21

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Co-authored papers 20

Scott L Carter

Co-authored papers 17

Carrie Sougnez

The Broad Institute of Harvard and MIT

Co-authored papers 16

Alex H Ramos

Co-authored papers 14

Daniel Auclair

Co-authored papers 14

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 14

Aaron McKenna

Co-authored papers 13

Petar Stojanov

Co-authored papers 12

Gordon Saksena

Broad Institute of Massachusetts Institute of Technology and Harvard

Co-authored papers 12

Douglas Voet

Co-authored papers 12

Todd R Golub

Broad Institute of MIT and Harvard

Co-authored papers 12

Robert C Onofrio

The Broad Institute of Harvard and MIT

Co-authored papers 12

Wendy Winckler

Co-authored papers 11

Trevor J Pugh

Princess Margaret Cancer Centre, University Health Network

Co-authored papers 10

Kristin G Ardlie

Co-authored papers 9

Nicolas Stransky

Co-authored papers 7

Erica Shefler

Co-authored papers 7

Elizabeth Nickerson

The Broad Institute of Harvard and MIT

Co-authored papers 6

Melissa Parkin

The Broad Institute of MIT and Harvard

Co-authored papers 6

Tim Fennell

Co-authored papers 6

Chandra Sekhar Pedamallu

Broad Institute

Co-authored papers 6

Adam Kiezun

Co-authored papers 6

Yotam Drier

Co-authored papers 6

Chip Stewart

Broad Institute of MIT and Harvard

Co-authored papers 6

Michael F Berger

Co-authored papers 6

1 - 30

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