Author details

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Full Name

Harold Pimentel

Affiliation

ORCID

Career Start Year

2011

Papers

17

H Index

14

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36638795	An evolved AAV variant enables efficient genetic engineering of murine TÂ cells.	Cell	2023
35716666	Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits.	Am J Hum Genet	2022
32084344	Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.	Cell	2020
31955845	Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.	Cell	2020
29650040	Gene-level differential analysis at transcript-level resolution.		2018
30114007	Intron retention is a source of neoepitopes in cancer.	Nat Biotechnol	2018
28581496	Differential analysis of RNA-seq incorporating quantification uncertainty.	Nature Methods	2017
28448519	Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways.	PLoS ONE	2017
28334086	Pseudoalignment for metagenomic read assignment.		2017
27905880	The Lair: a resource for exploratory analysis of published RNA-Seq data.	BMC Bioinformatics	2016
27043002	Near-optimal probabilistic RNA-seq quantification.	Nature Biotechnology	2016
26531823	A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis.	Nucleic Acids Research	2016
27504780	Erratum: Near-optimal probabilistic RNA-seq quantification.	Nature Biotechnology	2016
24442673	A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis.	Nucleic Acids Research	2014
23618408	TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.	Genome Biol	2013
22383036	Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.	Nat Protoc	2012
21697122	Identification of novel transcripts in annotated genomes using RNA-Seq.		2011

1 - 17 of 17

Co-authored papers 11

Jonathan K Pritchard

Co-authored papers 3

Caitlin I Stoddard

Fred Hutchinson Cancer Center.

Co-authored papers 2

Co-authored papers 2

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Co-authored papers 2

Hiten D Madhani

University of California san francisco

Co-authored papers 2

TheScripps Research Institute

Co-authored papers 2

Geeta J Narlikar

University of California san francisco

Co-authored papers 2

FranÃ§ois Aguet

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

W Craig Johnson

Co-authored papers 1

Nasa Sinnott-Armstrong

Co-authored papers 1

Stanford University School of Medicine

Co-authored papers 1

Broad Institute of MIT and Harvard

Co-authored papers 1

Catherine Tcheandjieu

Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 1

Co-authored papers 1

Stanford University School of Medicine.

Co-authored papers 1

Johns Hopkins University School of Medicine

Co-authored papers 1

Deborah A Nickerson

University of Washington

Co-authored papers 1

Jeffrey P Spence

Co-authored papers 1

Russell P Tracy

Co-authored papers 1

Eliezer M Van Allen

Dana-Farber Cancer Institute

Co-authored papers 1

Kristin G Ardlie

Co-authored papers 1

Co-authored papers 1

Hakhamanesh Mostafavi

Co-authored papers 1

Courtney J Smith

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

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