Author details

Full Name

John P Didion

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35764696	Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales.	Heredity (Edinb)	2022
34038741	Genetic effects on liver chromatin accessibility identify disease regulatory variants.	Am J Hum Genet	2021
32029221	Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures.	Mol Metab	2020
31385397	Analysis of somatic mutations identifies signs of selection during in vitro aging of primary dermal fibroblasts.	Aging Cell	2019
31076557	Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle.	Proc Natl Acad Sci U S A	2019
29792182	BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.	BMC Genomics	2018
28193859	Genetic regulatory signatures underlying islet gene expression and type 2 diabetes.	Proc Natl Acad Sci U S A	2017
28875074	Atropos: specific, sensitive, and speedy trimming of sequencing reads.	PeerJ	2017
27765810	Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers.	G3 (Bethesda)	2016
26882987	R2d2 Drives Selfish Sweeps in the House Mouse.	Mol Biol Evol	2016
27371833	The Evolutionary Fates of a Large Segmental Duplication in Mouse.	Genetics	2016
27353450	The genetic regulatory signature of type 2 diabetes in human skeletal muscle.	Nat Commun	2016
26018903	Corrigendum: analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.	Nat Genet	2015
25625625	Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling.	Nat Commun	2015
25730764	Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.	Nat Genet	2015
25679959	A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.	PLoS Genet	2015
26684931	The Mouse Universal Genotyping Array: From Substrains to Subspecies.	G3 (Bethesda)	2015
25277546	SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.	BMC Genomics	2014
23223940	Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse.	Mamm Genome	2013
24098153	Genetic architecture of skewed X inactivation in the laboratory mouse.	PLoS Genet	2013
22260749	Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias.	BMC Genomics	2012
21623374	Subspecific origin and haplotype diversity in the laboratory mouse.	Nat Genet	2011
21406540	Genetic analysis of complex traits in the emerging Collaborative Cross.	Genome Res	2011
20496149	The 23rd International Mammalian Genome Conference meeting report.	Mammalian Genome	2010
18408245	Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring.	Mol Cell Proteomics	2008