Author details

Full Name

Joshua N Adkins

Affiliation

ORCID

Career Start Year

2000

Papers

159

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37489262	New insights into the natural history of bronchopulmonary dysplasia from proteomics and multiplexed immunohistochemistry.	Am J Physiol Lung Cell Mol Physiol	2023
36778330	Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue.	bioRxiv	2023
36865303	CELA1 Mediates Progressive Emphysema in Alpha-1 Antitrypsin Deficiency.		2023
37534975	Chymotrypsin-like Elastase-1 Mediates Progressive Emphysema in Alpha-1 Antitrypsin Deficiency.		2023
34752721	Proteomic Analysis of Human Lung Development.	Am J Respir Crit Care Med	2022
36465564	An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue.	Front Mol Biosci	2022
34716329	High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip.	Nat Commun	2021
37283847	Preserved and variable spatial-chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade.	Plant Environ Interact	2021
34182779	Accumulation of Succinyl Coenzyme A Perturbs the Methicillin-Resistant <i>Staphylococcus aureus</i> (MRSA) Succinylome and Is Associated with Increased Susceptibility to Beta-Lactam Antibiotics.	mBio	2021
33637714	The Campylobacter jejuni CiaD effector co-opts the host cell protein IQGAP1 to promote cell entry.	Nature Communications	2021
34056417	Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH.	ACS Omega	2021
34132786	efam: an expanded, metaproteome-supported HMM profile database of viral protein families.	Bioinformatics	2021
34848696	Author Correction: High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip.	Nat Commun	2021
32941430	Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1.	PLoS One	2020
31896786	Phage-specific metabolic reprogramming of virocells.	ISME Journal	2020
31677050	Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure.	J Med Toxicol	2020
32887530	A porcine ligated loop model reveals new insight into the host immune response against .	Gut Microbes	2020
32586033	Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature.	International Journal of Molecular Sciences	2020
33298571	Amylases in the Human Vagina.	mSphere	2020
33008056	Characterization of Local and Systemic Impact of Whitefly () Feeding and Whitefly-Transmitted Tomato Mottle Virus Infection on Tomato Leaves by Comprehensive Proteomics.	International Journal of Molecular Sciences	2020
31530676	Stochastic Variation in Expression of the Tricarboxylic Acid Cycle Produces Persister Cells.	mBio	2019
31551400	Nipah Virus-Like Particle Egress Is Modulated by Cytoskeletal and Vesicular Trafficking Pathways: a Validated Particle Proteomics Analysis.	mSystems	2019
30507980	New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.	Analyst	2019
31527878	Unified feature association networks through integration of transcriptomic and proteomic data.	PLoS Comput Biol	2019
31509397	High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.	Anal Chem	2019
31031730	Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells.	Frontiers in Microbiology	2019
30858574	Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle.	Nat Microbiol	2019
29483291	Salmonella-Mediated Inflammation Eliminates Competitors for Fructose-Asparagine in the Gut.	Infect Immun	2018
30300549	Individual Variability of Protein Expression in Human Tissues.	J Proteome Res	2018
30542328	Rare Earth Elements Alter Redox Balance in <i>Methylomicrobium alcaliphilum</i> 20Z<sup>R</sup>.	Front Microbiol	2018
29568113	Multiple mechanisms drive phage infection efficiency in nearly identical hosts.	ISME J	2018
28077586	Redeploying Î²-Lactam Antibiotics as a Novel Antivirulence Strategy for the Treatment of Methicillin-Resistant Staphylococcus aureus Infections.	Journal of Infectious Diseases	2017
28854255	Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.	PLoS ONE	2017
28580643	Insights into PG-binding, conformational change, and dimerization of the OmpA C-terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferi.	Protein Sci	2017
29133896	The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species.	Scientific Reports	2017
29242347	Comprehensive computational design of ordered peptide macrocycles.	Science	2017
27822540	Identification of Novel Host Interactors of Effectors Secreted by <i>Salmonella</i> and <i>Citrobacter</i>.	mSystems	2016
27133506	The landscape of viral proteomics and its potential to impact human health.	Expert Rev Proteomics	2016
27357081	Ecosystem Services Connect Environmental Change to Human Health Outcomes.		2016
27398229	Persister formation in is associated with ATP depletion.	Nature Microbiology	2016
27572649	Persister formation in Staphylococcus aureus is associated with ATP depletion.	Nature Microbiology	2016
26143644	Quantitative Differences in the Urinary Proteome of Siblings Discordant for Type 1 Diabetes Include Lysosomal Enzymes.	J Proteome Res	2015
25713562	Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in Ï¿(E)-regulated SPI-2 gene expression.	Front Microbiol	2015
25686268	Global analysis of Salmonella alternative sigma factor E on protein translation.	J Proteome Res	2015
25650771	Electroporation of functional bacterial effectors into mammalian cells.	J Vis Exp	2015
26306205	The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity.	Sci Data	2015
26389830	ChIP-Seq Analysis of the Ï¿E Regulon of Salmonella enterica Serovar Typhimurium Reveals New Genes Implicated in Heat Shock and Oxidative Stress Response.	PLoS One	2015
26367458	Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens.	PLoS Genet	2015
26147956	Identification of Salmonella Typhimurium Deubiquitinase SseL Substrates by Immunoaffinity Enrichment and Quantitative Proteomic Analysis.	J Proteome Res	2015
25010333	Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.	PLoS One	2014