Author details

Full Name

Brenton R Graveley

Affiliation

ORCID

Career Start Year

1995

Papers

130

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37255445	Investigation of CRISPR-Independent Phage Resistance Mechanisms Reveals a Role for FtsH in Phage Adsorption to Streptococcus thermophilus.		2023
36321651	RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.	Nucleic Acids Res	2023
38064506	Late-life shift in caloric intake affects fly metabolism and longevity.		2023
37550505	Histones direct site-specific CRISPR spacer acquisition in model archaeon.		2023
34893878	Unique properties of spacer acquisition by the type III-A CRISPR-Cas system.	Nucleic Acids Research	2022
35713547	Direct tracking of reverse-transcriptase speed and template sensitivity: implications for sequencing and analysis of long RNA molecules.	Nucleic Acids Res	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
36385310	Hyper-stimulation of Pyrococcus furiosus CRISPR DNA uptake by a self-transmissible plasmid.	Extremophiles	2022
33402748	Author Correction: A large-scale binding and functional map of human RNA-binding proteins.	Nature	2021
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
32139573	Complete Genome Sequence of Streptococcus ratti JH145.	Microbiology Resource Announcements	2020
32259542	Sequencing and Structure Probing of Long RNAs Using MarathonRT: A Next-Generation Reverse Transcriptase.	J Mol Biol	2020
32421777	Primed CRISPR DNA uptake in Pyrococcus furiosus.	Nucleic Acids Research	2020
32252787	Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.	Genome Biol	2020
33176162	Poison Exon Splicing Regulates a Coordinated Network of SR Protein Expression during Differentiation and Tumorigenesis.	Mol Cell	2020
31392984	CRISPR DNA elements controlling site-specific spacer integration and proper repeat length by a Type II CRISPR-Cas system.	Nucleic Acids Research	2019
30413564	RBP-Maps enables robust generation of splicing regulatory maps.	RNA	2019
30652130	Regulation of RNA editing by RNA-binding proteins in human cells.	Commun Biol	2019
31219587	CRISPRÂ repeat sequences and relative spacing specify DNA integration by Pyrococcus furiosus Cas1 and Cas2.	Nucleic Acids Research	2019
30902979	Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.	Nat Commun	2019
31251911	Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.	Cell	2019
29439051	Complete Genome Sequence of Industrial Dairy Strain DGCC 7710.	Genome Announcements	2018
29932902	mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases.	Molecular Cell	2018
29883606	Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.	Mol Cell	2018
29883605	Cas4 Nucleases Define the PAM, Length, and Orientation of DNA Fragments Integrated at CRISPR Loci.	Molecular Cell	2018
30385616	Corrigendum: Tempo and mode of regulatory evolution in .	Genome Research	2018
29859120	Vex-seq: high-throughput identification of the impact of genetic variation on pre-mRNA splicing efficiency.		2018
29187228	RNAs: dynamic and mutable.		2017
29036456	Role of free DNA ends and protospacer adjacent motifs for CRISPR DNA uptake in Pyrococcus furiosus.	Nucleic Acids Research	2017
27716375	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27107712	A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27215799	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
26990993	Resources for the Comprehensive Discovery of Functional RNA Elements.	Mol Cell	2016
26907613	Distal Alternative Last Exons Localize mRNAs to Neural Projections.	Molecular Cell	2016
27447984	RNA Matchmaking: Finding Cellular Pairing Partners.	Molecular Cell	2016
27539622	Transcriptome and in Vitro Differentiation Profile of Human Embryonic Stem Cell Derived NKX2.1-Positive Neural Progenitors.	Stem Cell Rev Rep	2016
26294687	Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila.	Genome Res	2015
25866926	Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation.	eLife	2015
25780115	Musings on 20 years of RNA.	RNA	2015
25904135	Three CRISPR-Cas immune effector complexes coexist in Pyrococcus furiosus.	RNA	2015
25569156	The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing.	eLife	2015
25768907	Codon optimality is a major determinant of mRNA stability.	Cell	2015
25970244	Genome-wide identification of zero nucleotide recursive splicing in Drosophila.	Nature	2015
26041937	Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome.	Molecular Biology and Evolution	2015
26420219	Determining exon connectivity in complex mRNAs by nanopore sequencing.		2015
26294686	Regulation of alternative splicing in Drosophila by 56 RNA binding proteins.	Genome Res	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25544350	Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.	Cell Rep	2014
25694803	Gene expression analysis of human induced pluripotent stem cell-derived neurons carrying copy number variants of chromosome 15q11-q13.1.	Molecular Autism	2014
25262759	DNA copy number evolution in Drosophila cell lines.	Genome Biol	2014