Skip to Main Content

Author Details

Bridget T McInnes
Virginia Commonwealth University
2007
44
11
PMIDPaper TitleJournal TitlePublished Year
36464228An overview of biomedical entity linking throughout the years.J Biomed Inform2023
37146741Exploring a deep learning neural architecture for closed Literature-based discovery.J Biomed Inform2023
34920128Extracting experimental parameter entities from scientific articles.J Biomed Inform2022
35671034Discovering Content through Text Mining for a Synthetic Biology Knowledge System.ACS Synth Biol2022
35850379Call for papers: Semantics-enabled biomedical literature analytics.J Biomed Inform2022
35413440Effects of data and entity ablation on multitask learning models for biomedical entity recognition.J Biomed Inform2022
37465200Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization.Proc Int World Wide Web Conf2022
36066925Attention-Based Models for Classifying Small Data Sets Using Community-Engaged Research Protocols: Classification System Development and Validation Pilot Study.JMIR Form Res2022
36352893Temporal disambiguation of relative temporal expressions in clinical texts.Front Res Metr Anal2022
35951425TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4.Database (Oxford)2022
36080376Cascade Processes with Micellar Reaction Media: Recent Advances and Future Directions.Molecules2022
34209404Machine Assisted Experimentation of Extrusion-Based Bioprinting Systems.Micromachines (Basel)2021
33862232Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be.J Biomed Inform2021
34586386Transferability of neural network clinical deidentification systems.J Am Med Inform Assoc2021
34457173Pseudo-data generation for the extraction of Problems, Treatments and Tests.AMIA Jt Summits Transl Sci Proc2021
34457157Extracting Adverse Drug Events from Clinical Notes.AMIA Jt Summits Transl Sci Proc2021
34387462Synthetic Biology Knowledge System.ACS Synth Biol2021
34250435Using Literature Based Discovery to Gain Insights Into the Metabolomic Processes of Cardiac Arrest.Front Res Metr Anal2021
34322654Identifying Chemical Reactions and Their Associated Attributes in Patents.Front Res Metr Anal2021
32477667Local Topic Mining for Reflective Medical Writing.AMIA Jt Summits Transl Sci Proc2020
33035705Measuring the quality of patient-physician communication.J Biomed Inform2020
32890727Adverse drug event detection using reason assignments in FDA drug labels.J Biomed Inform2020
31259013A Literature Based Discovery Visualization System with Hierarchical Clustering and Linking Set Associations.AMIA Jt Summits Transl Sci Proc2019
30197305Association measures for estimating semantic similarity and relatedness between biomedical concepts.Artif Intell Med2019
31416434Indirect association and ranking hypotheses for literature based discovery.BMC Bioinformatics2019
29247788Vector representations of multi-word terms for semantic relatedness.J Biomed Inform2018
28838802Literature Based Discovery: Models, methods, and trends.J Biomed Inform2017
29066897An annotated corpus with nanomedicine and pharmacokinetic parameters.Int J Nanomedicine2017
25523466Evaluating semantic similarity and relatedness over the semantic grouping of clinical term pairs.J Biomed Inform2015
26199848Using natural language processing techniques to inform research on nanotechnology.Beilstein J Nanotechnol2015
25705556Challenges and practical approaches with word sense disambiguation of acronyms and abbreviations in the clinical domain.Healthc Inform Res2015
24076369Determining the difficulty of Word Sense Disambiguation.J Biomed Inform2014
25954395U-path: An undirected path-based measure of semantic similarity.AMIA Annu Symp Proc2014
24012881Evaluating measures of semantic similarity and relatedness to disambiguate terms in biomedical text.J Biomed Inform2013
22564551Using PharmGKB to train text mining approaches for identifying potential gene targets for pharmacogenomic studies.J Biomed Inform2012
23304271Evaluating semantic relatedness and similarity measures with Standardized MedDRA Queries.AMIA Annu Symp Proc2012
21044697Towards a framework for developing semantic relatedness reference standards.J Biomed Inform2011
22195148Knowledge-based method for determining the meaning of ambiguous biomedical terms using information content measures of similarity.AMIA Annu Symp Proc2011
22195227Evaluating measures of redundancy in clinical texts.AMIA Annu Symp Proc2011
21635749Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.BMC Bioinformatics2011
21658291Collocation analysis for UMLS knowledge-based word sense disambiguation.BMC Bioinformatics2011
21347043Semantic Similarity and Relatedness between Clinical Terms: An Experimental Study.AMIA Annu Symp Proc2010
20351894UMLS-Interface and UMLS-Similarity : open source software for measuring paths and semantic similarity.AMIA Annu Symp Proc2009
18693893Using UMLS Concept Unique Identifiers (CUIs) for word sense disambiguation in the biomedical domain.AMIA Annu Symp Proc2007
  • 1 - 44 of 44

Recommended Authors

Jun Xu
The University of Texas Health Science Center at Houston
Career Start Year 2015
Number of shared co-authors 0
Jingqi Wang
The University of Texas Health Science Center at Houston
Career Start Year 2015
Number of shared co-authors 2
Yaoyun Zhang
The University of Texas School of Biomedical Informatics
Career Start Year 2015
Number of shared co-authors 1
Majid Rastegar-Mojarad
Mayo Clinic
Career Start Year 2013
Number of shared co-authors 1
Dingcheng Li
University of Minnesota
Career Start Year 2012
Number of shared co-authors 1
Yonghui Wu
University of Florida
Career Start Year 2011
Number of shared co-authors 1
Stephen Wu
The University of Texas Health Science Center at Houston
Career Start Year 2011
Number of shared co-authors 3
Ramakanth Kavuluru
College of Medicine, University of Kentucky
Career Start Year 2011
Number of shared co-authors 3
Sanda M Harabagiu
Human Language Technology Research Institute, University of Texas at Dallas
Career Start Year 2010
Number of shared co-authors 0
Siddhartha R Jonnalagadda
Department of Preventative Medicine Northwestern University Chicago IL.
Career Start Year 2010
Number of shared co-authors 2
Robert Leaman
National Institutes of Health
Career Start Year 2008
Number of shared co-authors 0
Min Song
Yonsei University
Career Start Year 2007
Number of shared co-authors 0
Qiaozhu Mei
University of Michigan ann arbor
Career Start Year 2006
Number of shared co-authors 2
Zhiyong Lu
National Center for Biotechnology Information, National Institutes of Health.
Career Start Year 2005
Number of shared co-authors 1
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Career Start Year 2005
Number of shared co-authors 1
Dina Demner-Fushman
Lister Hill National Center for Biomedical Communications
Career Start Year 2004
Number of shared co-authors 3
Kevin Bretonnel Cohen
University of Colorado Denver
Career Start Year 2004
Number of shared co-authors 2
Trevor Cohen
University of Washington (A.M.U., University of Washington (J.S.
Career Start Year 2004
Number of shared co-authors 2
Guergana Savova
Boston Children's Hospital, Harvard Medical School.
Career Start Year 2003
Number of shared co-authors 3
Hua Xu
Yale University
Career Start Year 2003
Number of shared co-authors 4
Dietrich Rebholz-Schuhmann
University of Cologne
Career Start Year 2003
Number of shared co-authors 0
Patrick Ruch
University of Applied Sciences and Arts of Western Switzerland (HES-SO).
Career Start Year 1999
Number of shared co-authors 1
Hongfang Liu
Mayo Clinic
Career Start Year 1999
Number of shared co-authors 6
Filip Ginter
University of Turku
Career Start Year 1996
Number of shared co-authors 1
Lawrence E Hunter
University of Colorado School of Medicine
Career Start Year 1993
Number of shared co-authors 2
Olivier Bodenreider
National Institutes of Health
Career Start Year 1993
Number of shared co-authors 5
Tapio Salakoski
University of Turku
Career Start Year 1992
Number of shared co-authors 1
Carol Friedman
Columbia University
Career Start Year 1990
Number of shared co-authors 2
Lynette Hirschman
The MITRE Corporation
Career Start Year 1981
Number of shared co-authors 1
W John Wilbur
National Center for Biotechnology Information, National Institutes of Health
Career Start Year 1978
Number of shared co-authors 1

Collaborators

Ted Pedersen
University of Minnesota duluth
Co-authored papers 9
Genevieve B Melton
University of Minnesota
Co-authored papers 8
Serguei Pakhomov
University of Minnesota
Co-authored papers 8
Sam Henry
George Mason University
Co-authored papers 6
Amy L Olex
Virginia Commonwealth University
Co-authored papers 4
Antonio Jimeno Yepes
Co-authored papers 2
Alan R Aronson
National Institutes of Health
Co-authored papers 2
??zlem Uzuner
George Mason University
Co-authored papers 2
Sungrim Moon
Mayo Clinic
Co-authored papers 1
Lucy Lu Wang
University of Washington, USA Allen Institute for AI
Co-authored papers 1
Rui Zhang
University of Minnesota
Co-authored papers 1
Alex H Krist
Virginia Commonwealth University
Co-authored papers 1
Christopher G Chute
Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota
Co-authored papers 1
Halil Kilicoglu
University of Illinois Urbana-Champaign
Co-authored papers 1
Alexander P Ruggieri
Mayo Clinic
Co-authored papers 1
Terrence J Adam
University of Minnesota, Institute for Health Informatics.
Co-authored papers 1
Release 1.2