Author details

Full Name

Bin Hu

Affiliation

Los Alamos National Laboratory

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37735266	Identification of mobile genetic elements with geNomad.	Nat Biotechnol	2023
36380755	Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.	bioRxiv	2022
35599623	Healthy humans can be a source of antibodies countering COVID-19.	Bioengineered	2022
35561186	EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.	Bioinformatics	2022
36962439	Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods.	PLOS Glob Public Health	2022
36303775	Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.	Front Bioinform	2022
32777813	A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.	Bioinformatics	2021
33494894	DNA adenine methylase, not the PstI restriction-modification system, regulates virulence gene expression in Shiga toxin-producing Escherichia coli.	Food Microbiol	2021
33947809	Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".	mSystems	2021
34307800	Epigenetic regulation of gene expression in Shiga toxin-producing <i>Escherichia coli</i>: Transcriptomic data.	Data Brief	2021
32350400	The National Microbiome Data Collaborative: enabling microbiome science.	Nat Rev Microbiol	2020
26799320	Molecular Dissection of Induced Platinum Resistance through Functional and Gene Expression Analysis in a Cell Culture Model of Bladder Cancer.	PLoS One	2016
28030576	Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages.	PLoS One	2016
24499928	Estimating the probability of polyreactive antibodies 4E10 and 2F5 disabling a gp41 trimer after T cell-HIV adhesion.	PLoS Comput Biol	2014
25147952	Phosphorylation site dynamics of early T-cell receptor signaling.	PLoS One	2014
24007210	Functionalization-dependent induction of cellular survival pathways by CdSe quantum dots in primary normal human bronchial epithelial cells.	ACS Nano	2013
21288338	Hierarchical graphs for rule-based modeling of biochemical systems.	BMC Bioinformatics	2011
22199376	Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.	Brief Funct Genomics	2011
21647530	Guidelines for visualizing and annotating rule-based models.	Mol Biosyst	2011
19321734	GetBonNie for building, analyzing and sharing rule-based models.	Bioinformatics	2009
18378701	AlphaPIX Rho GTPase guanine nucleotide exchange factor regulates lymphocyte functions and antigen receptor signaling.	Mol Cell Biol	2008

1 - 21 of 21

Alexandra J Lee

University of Pennsylvania

Career Start Year 2015

Number of shared co-authors 0

Cameron Ross MacPherson

Rigshospitalet, Copenhagen University Hospital

Career Start Year 2008

Number of shared co-authors 0

Ulrich Omasits

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2008

Number of shared co-authors 0

Fangfang Xia

University of Chicago

Career Start Year 2007

Number of shared co-authors 4

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 1

Brandi L Cantarel

University of Texas Southwestern Medical Center

Career Start Year 2006

Number of shared co-authors 0

Johannes B Goll

.The Emmes Corporation

Career Start Year 2005

Number of shared co-authors 0

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Seesandra V Rajagopala

Vanderbilt University Medical Center

Career Start Year 2004

Number of shared co-authors 0

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 1

Rick Stevens

Argonne National Laboratory

Career Start Year 2004

Number of shared co-authors 10

Maulik Shukla

University of Chicago

Career Start Year 2003

Number of shared co-authors 5

Hugh D Mitchell

Pacific Northwest National Laboratory (PNNL)

Career Start Year 2002

Number of shared co-authors 3

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 0

Scott H Harrison

North Carolina Agricultural and Technical State University

Career Start Year 2002

Number of shared co-authors 1

Andrey Tovchigrechko

J. Craig Venter Institute, 9605 Medical Center Dr

Career Start Year 2001

Number of shared co-authors 0

Jason F Kreisberg

University of California San Diego

Career Start Year 2000

Number of shared co-authors 0

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 0

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 1

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Jonathan Crabtree

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1998

Number of shared co-authors 1

Ana Tereza Ribeiro de Vasconcelos

The National Laboratory for Scientific Computing (LNCC)

Career Start Year 1997

Number of shared co-authors 0

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 2

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 0

John Parkinson

The Hospital for Sick Children

Career Start Year 1994

Number of shared co-authors 0

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 4

Joseph L DeRisi

University of California San Francisco

Career Start Year 1994

Number of shared co-authors 1

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 5

Richard H Scheuermann

J. Craig Venter Institute

Career Start Year 1983

Number of shared co-authors 5

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 0

row(s) 1 - 30 of 30

Patrick S G Chain

Los Alamos National Laboratory

Co-authored papers 13

Po-E Li

Los Alamos National Laboratory

Co-authored papers 6

Chien-Chi Lo

Los Alamos National Laboratory

Co-authored papers 6

Karen W Davenport

Los Alamos National Laboratory

Co-authored papers 5

Migun Shakya

Los Alamos National Laboratory

Co-authored papers 4

Emiley A Eloe-Fadrosh

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 3

Nigel J Mouncey

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 3

Shane Canon

Lawrence Berkeley National Laboratory

Co-authored papers 3

William D Duncan

University of Florida

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Yan Xu

Los Alamos National Laboratory

Co-authored papers 3

Lee Ann McCue

Pacific Northwest National Laboratory

Co-authored papers 3

Stanton L Martin

Oak Ridge National Laboratory

Co-authored papers 2

Marcel Huntemann

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory