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Author Details

Aleksandar Stojmirovic
Janssen Research & Development LLC
2007
29
13
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37814351Deep Learning Models Capture Histological Disease Activity in Crohn's Disease and Ulcerative Colitis with High Fidelity.J Crohns Colitis2024
37832924Using Computer Vision to Improve Endoscopic Disease Quantification in Therapeutic Clinical Trials of Ulcerative Colitis.Gastroenterology2024
36109152Biopsy and blood-based molecular biomarker of inflammation in IBD.Gut2023
36694043A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.Commun Biol2023
34780722Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets.Gastroenterology2022
35190725Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity.Nat Med2022
32980345Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2-related Disease.Gastroenterology2021
33601420Polygenic risk score for alcohol drinking behavior improves prediction of inflammatory bowel disease risk.Hum Mol Genet2021
33813036Deep Analysis of the Peripheral Immune System in IBD Reveals New Insight in Disease Subtyping and Response to Monotherapy or Combination Therapy.Cell Mol Gastroenterol Hepatol2021
34480882Molecular Characterization of Limited Ulcerative Colitis Reveals Novel Biology and Predictors of Disease Extension.Gastroenterology2021
30842312PAI-1 augments mucosal damage in colitis.Sci Transl Med2019
29782846Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease.Gastroenterology2018
28892060A functional genomics predictive network model identifies regulators of inflammatory bowel disease.Nat Genet2017
27336838Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci.Clin Transl Gastroenterol2016
25294922Log-odds sequence logos.Bioinformatics2015
26594663NDEx, the Network Data Exchange.Cell Syst2015
25609797Topology-function conservation in protein-protein interaction networks.Bioinformatics2015
24686408Revealing the hidden language of complex networks.Sci Rep2014
24978199Building a hierarchical organization of protein complexes out of protein association data.PLoS One2014
24479118PFMFind: a system for discovery of peptide homology and function.Similarity Search Appl2013
22345616CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores.Bioinformatics2012
22587372CytoITMprobe: a network information flow plugin for Cytoscape.BMC Res Notes2012
22409812Information flow in interaction networks II: channels, path lengths, and potentials.J Comput Biol2012
21873645ppiTrim: constructing non-redundant and up-to-date interactomes.Database (Oxford)2011
20826881Robust and accurate data enrichment statistics via distribution function of sum of weights.Bioinformatics2010
19561335ITM Probe: analyzing information flow in protein networks.Bioinformatics2009
19361329Geometric aspects of biological sequence comparison.J Comput Biol2009
18586708The effectiveness of position- and composition-specific gap costs for protein similarity searches.Bioinformatics2008
17985991Information flow in interaction networks.J Comput Biol2007
  • 1 - 29 of 29

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Collaborators

Eric E Schadt
Icahn School of Medicine at Mount Sinai
Co-authored papers 9
Ke Hao
Co-authored papers 7
Bojan Losic
Co-authored papers 6
Bruce E Sands
Icahn School of Medicine at Mount Sinai
Co-authored papers 6
Jean-Frederic Colombel
Icahn School of Medicine at Mount Sinai
Co-authored papers 6
Judy H Cho
Co-authored papers 6
Marla C Dubinsky
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Jun Zhu
Co-authored papers 4
Radu Dobrin
Janssen Research & Development Inc.
Co-authored papers 4
Sander M Houten
Co-authored papers 3
Brian A Kidd
Co-authored papers 2
Thaddeus S Stappenbeck
Co-authored papers 2
Adeeb Rahman
Co-authored papers 2
Ashish Atreja
Icahn School of Medicine at Mount Sinai
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Ricardo Rivas
University of California San Diego
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El-Ad David Amir
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Carol Miello
Pfizer Inc.
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Dexter Pratt (CM4AI)
UC San Diego
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Jing Chen
University of Science and Technology of China
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John A Capra
Bakar Computational Health Sciences Institute, University of California san francisco
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Khader Shameer
School of Public Health, Imperial College London
Co-authored papers 1
Sergio A Lira
Co-authored papers 1
Vladimir Rynkov
University of California San Diego
Co-authored papers 1
Bin Zhang
Graduate School of Medicine, The University of Tokyo
Co-authored papers 1
Riccardo Miotto
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Michael Braxenthaler
Physiologisch-chemisches Institut, University of Tubingen
Co-authored papers 1
Eunjee Lee
Chungnam National University
Co-authored papers 1
Francesca Petralia
Co-authored papers 1
Miriam Merad
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Gerard E Kaiko
Co-authored papers 1
Release 1.2