Author details

Full Name

Ivaylo Ivanov

Affiliation

Georgia State University, GA 30302 USA Center for Diagnostics and Therapeutics

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36477609	A scanning-to-incision switch in TFIIH-XPG induced by DNA damage licenses nucleotide excision repair.	Nucleic Acids Res	2023
37179334	Dynamic conformational switching underlies TFIIH function in transcription and DNA repair and impacts genetic diseases.	Nat Commun	2023
37264880	Isolation and characterization of natural inhibitors of post-proline specific peptidases from the leaves of Cotinus coggygria Scop.	J Ethnopharmacol	2023
34853308	Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair.	Nat Commun	2021
32202798	Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy.	J Chem Inf Model	2020
34046601	Pharmacophore-based screening of diamidine small molecule inhibitors for protein arginine methyltransferases.	RSC Med Chem	2020
33097731	Polymerization and editing modes of a high-fidelity DNA polymerase are linked by a well-defined path.	Nat Commun	2020
33007515	Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair.	DNA Repair (Amst)	2020
32669428	Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6.	Proc Natl Acad Sci U S A	2020
31051173	Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps.	J Mol Biol	2019
31110295	Transcription preinitiation complex structure and dynamics provide insight into genetic diseases.	Nat Struct Mol Biol	2019
29784784	Uncovering universal rules governing the selectivity of the archetypal DNA glycosylase TDG.	Proc Natl Acad Sci U S A	2018
30083386	Structural visualization of RNA polymerase III transcription machineries.	Cell Discov	2018
29641204	Natural Product Micheliolide (MCL) Irreversibly Activates Pyruvate Kinase M2 and Suppresses Leukemia.	J Med Chem	2018
29389071	Combinatorial Probes for High-Throughput Electrochemical Analysis of Circulating Nucleic Acids in Clinical Samples.	Angew Chem Int Ed Engl	2018
29610463	Single-cell mRNA cytometry via sequence-specific nanoparticle clustering and trapping.	Nat Chem	2018
28623663	Structural mechanism of ATP-independent transcription initiation by RNA polymerase I.	Elife	2017
28230529	Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1.	Elife	2017
28180310	DNA microstructure influences selective binding of small molecules designed to target mixed-site DNA sequences.	Nucleic Acids Res	2017
28649316	Discovery of Decamidine as a New and Potent PRMT1 Inhibitor.	Medchemcomm	2017
27109703	Secondary Interaction Interfaces with PCNA Control Conformational Switching of DNA Polymerase PolB from Polymerization to Editing.	J Phys Chem B	2016
26553876	Unexpected Allosteric Network Contributes to LRH-1 Co-regulator Selectivity.	J Biol Chem	2016
27241473	Rational design of a protein that binds integrin Î±vÎ²3 outside the ligand binding site.	Nat Commun	2016
27263093	Effect of acute hypoxic shock on the rat brain morphology and tripeptidyl peptidase I activity.	Acta Histochem	2016
27262595	Discovery of selective inhibitors of tyrosyl-DNA phosphodiesterase 2 by targeting the enzyme DNA-binding cleft.	Bioorg Med Chem Lett	2016
27193682	Near-atomic resolution visualization of human transcription promoter opening.	Nature	2016
27513828	DNA Clutch Probes for Circulating Tumor DNA Analysis.	J Am Chem Soc	2016
26715749	Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.	Proc Natl Acad Sci U S A	2016
25377874	Nanoparticle-mediated binning and profiling of heterogeneous circulating tumor cell subpopulations.	Angew Chem Int Ed Engl	2015
26557958	Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution.	Comput Struct Biotechnol J	2015
26100805	An electrochemical clamp assay for direct, rapid analysis of circulating nucleic acids in serum.	Nat Chem	2015
25905604	Bifunctionalized Allenes. Part XVI. Synthesis of 3-Phosphoryl-2,5-dihydrofurans by Coinage Metal-Catalyzed Cyclo-isomerization of Phosphorylated Î±-Hydroxyallenes.	Molecules	2015
26009151	Sample-to-Answer Isolation and mRNA Profiling of Circulating Tumor Cells.	Anal Chem	2015
26004442	Functional dynamics in replication protein A DNA binding and protein recruitment domains.	Structure	2015
25773143	Structurally distinct ubiquitin- and sumo-modified PCNA: implications for their distinct roles in the DNA damage response.	Structure	2015
24564570	Diamidine compounds for selective inhibition of protein arginine methyltransferase 1.	J Med Chem	2014
24992034	Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases.	PLoS Comput Biol	2014
25076142	Bifunctionalized allenes. Part XV. Synthesis of 2,5-dihydro-1,2-oxaphospholes by electrophilic cyclization reaction of phosphorylated Î±-hydroxyallenes.	Molecules	2014
24840901	Bifunctionalized allenes. Part XIII. A convenient and efficient method for regioselective synthesis of phosphorylated Î±-hydroxyallenes with protected and unprotected hydroxy group.	Molecules	2014
23303776	A new structural framework for integrating replication protein A into DNA processing machinery.	Nucleic Acids Res	2013
24038358	Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1.	Nucleic Acids Res	2013
23783571	Probing DNA clamps with single-molecule force spectroscopy.	Nucleic Acids Res	2013
23167816	Chip-based nanostructured sensors enable accurate identification and classification of circulating tumor cells in prostate cancer patient blood samples.	Anal Chem	2013
23247167	Enzyme cofactors: double-edged sword for catalysis.	Nat Chem	2013
23355472	Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes.	J Biol Chem	2013
22185679	Comparison of the activity levels and localization of dipeptidyl peptidase IV in normal and tumor human lung cells.	Tissue Cell	2012
23007433	Molecular dynamics.	Methods Mol Biol	2012
22586102	Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability.	Proc Natl Acad Sci U S A	2012
21244835	Ion selectivity mechanism in a bacterial pentameric ligand-gated ion channel.	Biophys J	2011
21996941	Developmental study of tripeptidyl peptidase I activity in the mouse central nervous system and peripheral organs.	Cell Tissue Res	2011

1 - 50 of 80

Arthur O Zalevsky

University of California san francisco

Career Start Year 2015

Number of shared co-authors 0

Ignacia Echeverria

University of California san francisco

Career Start Year 2010

Number of shared co-authors 1

Robert V Swift

University of California San Diego

Career Start Year 2007

Number of shared co-authors 1

Dario Meluzzi

University of California San Diego

Career Start Year 2006

Number of shared co-authors 0

James S Fraser

University of California san francisco

Career Start Year 2006

Number of shared co-authors 3

Peter L Freddolino

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 0

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 1

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 2

Manuel Rueda

The Barcelona Institute of Science and Technology

Career Start Year 2001

Number of shared co-authors 0

Lewyn Li

Dana-Farber Cancer Institute, Harvard Medical School

Career Start Year 2000

Number of shared co-authors 0

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 1

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 0

Cameron Mura

University of Virginia

Career Start Year 1998

Number of shared co-authors 0

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 0

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 0

Alexei A Podtelezhnikov

Genetics and Pharmacogenomics, Merck & Co., Inc.

Career Start Year 1994

Number of shared co-authors 0

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 1

Gye Won Han

Bridge Institute, University of Southern California

Career Start Year 1991

Number of shared co-authors 1

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 0

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Career Start Year 1989

Number of shared co-authors 0

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 0

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 0

Piotr Cieplak

Sanford-Burnham-Prebys Medical Discovery Institute

Career Start Year 1987

Number of shared co-authors 0

Ariel Fern??ndez

University of Florida

Career Start Year 1984

Number of shared co-authors 0

Stephen K Burley

The State University of New Jersey

Career Start Year 1982

Number of shared co-authors 1

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 0

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 1

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 0

Joel L Sussman

Weizmann Institute of Science

Career Start Year 1971

Number of shared co-authors 0

Robert M Stroud

University of California San Francisco

Career Start Year 1965

Number of shared co-authors 1

row(s) 1 - 30 of 30

John A Tainer

The University of Texas MD Anderson Cancer Center

Co-authored papers 13

James Andrew McCammon

Co-authored papers 10

Walter J Chazin

and Center for Structural Biology, Vanderbilt University

Co-authored papers 3

William F DeGrado

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 3

Ivan Ivanov

Institute of Molecular Biology "Roumen Tsanev",Bulgarian Academy of Sciences

Co-authored papers 2

Dong Wang

Co-authored papers 1

Jianhua Xu

College of Pharmaceutical Sciences, Zhejian University

Co-authored papers 1

Dong Xu

University of Missouri

Co-authored papers 1

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Co-authored papers 1

Marek Pacal

Lunenfeld-Tanenbaum Research Institute

Co-authored papers 1

Rommie E Amaro

University of California

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Xiao-Chum Yang

Co-authored papers 1

Chia-En A Chang

Co-authored papers 1

Miguel A Providenti

Carleton University

Co-authored papers 1

Yves Pommier

Center for Cancer Research, National Cancer Institute

Co-authored papers 1

M C Ganoza

C. H. Best Institute, University of Toronto

Co-authored papers 1

Jun Xu

Co-authored papers 1

Mounir G AbouHaidar

University of Toronto

Co-authored papers 1

Juntaek Oh

Co-authored papers 1

1 - 20

Author Details

Column Actions

Recommended Authors

Collaborators