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Author Details

Kalyan C Vinnakota
Gilbert Family Foundation
2004
37
16
PMIDPaper TitleJournal TitlePublished Year
35735230Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database.Database (Oxford)2022
33387578Predicting changes in renal metabolism after compound exposure with a genome-scale metabolic model.Toxicol Appl Pharmacol2021
33691118Identifying functional metabolic shifts in heart failure with the integration of omics data and a heart-specific, genome-scale model.Cell Rep2021
31722432Genome-Scale Model-Based Identification of Metabolite Indicators for Early Detection of Kidney Toxicity.Toxicol Sci2020
30584952A simplified metabolic network reconstruction to promote understanding and development of flux balance analysis tools.Comput Biol Med2019
31501904Genome-Scale Characterization of Toxicity-Induced Metabolic Alterations in Primary Hepatocytes.Toxicol Sci2019
30974156Mechanistic identification of biofluid metabolite changes as markers of acetaminophen-induced liver toxicity in rats.Toxicol Appl Pharmacol2019
30881311Network Modeling of Liver Metabolism to Predict Plasma Metabolite Changes During Short-Term Fasting in the Laboratory Rat.Front Physiol2019
29474500Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats.PLoS Comput Biol2018
30076366Metabolic network-based predictions of toxicant-induced metabolite changes in the laboratory rat.Sci Rep2018
28320896Estrogen maintains mitochondrial content and function in the right ventricle of rats with pulmonary hypertension.Physiol Rep2017
27075244Mitochondrial structure and function are not different between nonfailing donor and end-stage failing human hearts.FASEB J2016
26910434Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria.Biophys J2016
26910433Catalytic Coupling of Oxidative Phosphorylation, ATP Demand, and Reactive Oxygen Species Generation.Biophys J2016
26910432Open-Loop Control of Oxidative Phosphorylation in Skeletal and Cardiac Muscle Mitochondria by Ca(2.).Biophys J2016
27085901Influence of metabolic dysfunction on cardiac mechanics in decompensated hypertrophy and heart failure.J Mol Cell Cardiol2016
27051507Improving the physiological realism of experimental models.Interface Focus2016
25606688Determination of the catalytic mechanism for mitochondrial malate dehydrogenase.Biophys J2015
25606689Characterization of the kinetics of cardiac cytosolic malate dehydrogenase and comparative analysis of cytosolic and mitochondrial isoforms.Biophys J2015
23870256Analysis of the kinetics and bistability of ubiquinol:cytochrome c oxidoreductase.Biophys J2013
22915334Modeling to link regional myocardial work, metabolism and blood flows.Ann Biomed Eng2012
21212251Point: Muscle lactate and H⁺ production do have a 1:1 association in skeletal muscle.J Appl Physiol (1985)2011
21757763Stimulatory effects of calcium on respiration and NAD(P)H synthesis in intact rat heart mitochondria utilizing physiological substrates cannot explain respiratory control in vivo.J Biol Chem2011
21498518Identification of the catalytic mechanism and estimation of kinetic parameters for fumarase.J Biol Chem2011
21244833Kinetic analysis and design of experiments to identify the catalytic mechanism of the monocarboxylate transporter isoforms 4 and 1.Biophys J2011
20308252Common phenotype of resting mouse extensor digitorum longus and soleus muscles: equal ATPase and glycolytic flux during transient anoxia.J Physiol2010
20446702A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle.J Phys Chem B2010
20526029Analysis of the diffusion of Ras2 in Saccharomyces cerevisiae using fluorescence recovery after photobleaching.Phys Biol2010
19244386BISEN: Biochemical Simulation Environment.Bioinformatics2009
19964622Design of experiments for identification of complex biochemical systems with applications to mitochondrial bioenergetics.Annu Int Conf IEEE Eng Med Biol Soc2009
19216922Multiple ion binding equilibria, reaction kinetics, and thermodynamics in dynamic models of biochemical pathways.Methods Enzymol2009
18350161Detailed enzyme kinetics in terms of biochemical species: study of citrate synthase.PLoS One2008
18926797Regulation of ENaC expression at the cell surface by Rab11.Biochem Biophys Res Commun2008
17591785Computer modeling of mitochondrial tricarboxylic acid cycle, oxidative phosphorylation, metabolite transport, and electrophysiology.J Biol Chem2007
16617075Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kinetics.Biophys J2006
14693681Myocardial density and composition: a basis for calculating intracellular metabolite concentrations.Am J Physiol Heart Circ Physiol2004
15201177The computational integrated myocyte: a view into the virtual heart.Ann N Y Acad Sci2004
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Collaborators

Jason A Papin
University of Virginia
Co-authored papers 6
Jamey D Young
Co-authored papers 4
Edik M Blais
University of Virginia
Co-authored papers 2
Marco Marasca
Co-authored papers 1
James R Goss
Gilbert Family Foundation
Co-authored papers 1
Robert J Allaway
Geisel School of Medicine, Dartmouth College
Co-authored papers 1
Jineta Banerjee
UW Medicine Diabetes Institute, University of Washington
Co-authored papers 1
Brynn Zalmanek
Co-authored papers 1
James A Eddy
Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign
Co-authored papers 1
Yoori Kim
Daegu Gyeongbuk Institute of Science and Technology (DGIST)
Co-authored papers 1
Ashley Clayton
Yale School of Medicine
Co-authored papers 1
John A Hodgson
Walter Reed National Military Medical Center
Co-authored papers 1
Milen Nikolov
Institute for Disease Modeling Bellevue Washington USA.
Co-authored papers 1
Stockard Simon
Co-authored papers 1
Robert S Balaban
Co-authored papers 1
Brian E Carlson
Co-authored papers 1
John J Rice
Co-authored papers 1
Kevin J Boske
Co-authored papers 1
Patrik Rorsman
Co-authored papers 1
Bruce Hoff
Hughes Research Laboratories
Co-authored papers 1
Julie A Bletz
Co-authored papers 1
Mialy M DeFelice
Stanford University
Co-authored papers 1
Ljubomir Bradic
Co-authored papers 1
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