|
| 36624229 | Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. | | 2023 |
| 36370105 | The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. | Nucleic Acids Res | 2023 |
| 36408900 | proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. | Nucleic Acids Res | 2023 |
| 36399505 | eggNOG 6.0: enabling comparative genomics across 12Â 535 organisms. | Nucleic Acids Res | 2023 |
| 37659604 | PaxDb 5.0: Curated Protein Quantification Data Suggests Adaptive Proteome Changes in Yeasts. | Mol Cell Proteomics | 2023 |
| 36512705 | Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. | J Proteome Res | 2023 |
| 36697832 | Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. | Nature | 2023 |
| 37123454 | CanIsoNet: a database to study the functional impact of isoform switching events in diseases. | Bioinform Adv | 2023 |
| 35185839 | The Evolution of Ecological Diversity in . | Frontiers in Microbiology | 2022 |
| 36088548 | Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments. | Briefings in Bioinformatics | 2022 |
| 35891387 | Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. | Viruses | 2022 |
| 35353008 | Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation. | mSystems | 2022 |
| 34530444 | Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets'. | Nucleic Acids Res | 2021 |
| 33688005 | Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. | mBio | 2021 |
| 34001188 | treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. | Genome Biol | 2021 |
| 33237311 | The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. | Nucleic Acids Res | 2021 |
| 34888349 | Probing Isoform Switching Events in Various Cancer Types: Lessons From Pan-Cancer Studies. | Front Mol Biosci | 2021 |
| 32518402 | Publisher Correction: ChromID identifies the protein interactome at chromatin marks. | Nat Biotechnol | 2020 |
| 32123383 | ChromID identifies the protein interactome at chromatin marks. | Nat Biotechnol | 2020 |
| 32047279 | Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity. | ISME J | 2020 |
| 32328670 | Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses. | Microbial Ecology | 2020 |
| 32879328 | Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network. | Sci Rep | 2020 |
| 31047794 | Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. | Molecular Cell | 2019 |
| 30476243 | STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. | Nucleic Acids Res | 2019 |
| 30418610 | eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. | Nucleic Acids Res | 2019 |
| 31542415 | Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data. | | 2019 |
| 31060495 | Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies. | BMC Bioinformatics | 2019 |
| 31107248 | Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner. | Journal of Clinical Investigation | 2019 |
| 29472638 | Unexplored therapeutic opportunities in the human genome. | Nat Rev Drug Discov | 2018 |
| 30355348 | Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. | Microbiome | 2018 |
| 30215772 | Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition. | Nucleic Acids Research | 2018 |
| 30249048 | Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. | Viruses | 2018 |
| 29567993 | Unexplored therapeutic opportunities in the human genome. | Nat Rev Drug Discov | 2018 |
| 27924014 | The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. | Nucleic Acids Res | 2017 |
| 28467899 | High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43. | Cell Reports | 2017 |
| 28689869 | Effects of oral antibiotics and isotretinoin on the murine gut microbiota. | International Journal of Antimicrobial Agents | 2017 |
| 28460117 | Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper. | Mol Biol Evol | 2017 |
| 28961926 | MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis. | | 2017 |
| 29184071 | Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression. | Sci Rep | 2017 |
| 28077569 | RAIN: RNA-protein Association and Interaction Networks. | Database (Oxford) | 2017 |
| 27935587 | A family of interaction-adjusted indices of community similarity. | ISME Journal | 2017 |
| 28232526 | Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability. | Science | 2017 |
| 28187782 | Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details. | Microbiome | 2017 |
| 26582926 | eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. | Nucleic Acids Res | 2016 |
| 27043882 | Standardized benchmarking in the quest for orthologs. | Nat Methods | 2016 |
| 26944343 | Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans. | Molecular and Cellular Proteomics | 2016 |
| 27453483 | IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection. | | 2016 |
| 26614125 | SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. | Bioinformatics | 2016 |
| 26590256 | STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. | Nucleic Acids Res | 2016 |
| 25156547 | Limits to robustness and reproducibility in the demarcation of operational taxonomic units. | Environmental Microbiology | 2015 |