Author details

Full Name

JÃ¶rg HackermÃ¼ller

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37512556	Assessing the Influence of Propylthiouracil and Phenytoin on the Metabolomes of the Thyroid, Liver, and Plasma in Rats.		2023
37688808	A data-derived reference mixture representative of European wastewater treatment plant effluents to complement mixture assessment.		2023
34714945	The Eco-Exposome Concept: Supporting an Integrated Assessment of Mixtures of Environmental Chemicals.	Environmental Toxicology and Chemistry	2022
35849097	AI for predicting chemical-effect associations at the chemical universe level-deepFPlearn.	Briefings in Bioinformatics	2022
36261438	HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids.	Nature Communications	2022
35543751	The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment.	Archives of Toxicology	2022
33278487	Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP.	Toxicology	2021
32203153	Alzheimer-related genes show accelerated evolution.	Molecular Psychiatry	2021
34108957	A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation.	Frontiers in Immunology	2021
33996806	Mouse Retinal Organoid Growth and Maintenance in Longer-Term Culture.	Frontiers in Cell and Developmental Biology	2021
33614387	Unravelling the chemical exposome in cohort studies: routes explored and steps to become comprehensive.	Environmental Sciences Europe	2021
33287694	multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data.	BMC Bioinformatics	2020
32365858	The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer.	Cancers	2020
31710888	Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species.		2020
32034435	Prospects and challenges of multi-omics data integration in toxicology.	Archives of Toxicology	2020
32631745	ProstaTrend-A Multivariable Prognostic RNA Expression Score for Aggressive Prostate Cancer.	Eur Urol	2020
31519144	Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods.	BMC Genomics	2019
31830916	uap: reproducible and robust HTS data analysis.	BMC Bioinformatics	2019
30387691	Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking.	Biomarkers	2019
29471506	A translational silencing function of MCPIP1/Regnase-1 specified by the target site context.	Nucleic Acids Research	2018
28392331	Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications.	J Allergy Clin Immunol	2018
30232334	Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation.	Nat Commun	2018
29352114	Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA.	Nature Communications	2018
28168014	Complete genome sequence of phage vB_PspS-H40/1 (formerly H40/1) that infects sp. strain H40 and is used as biological tracer in hydrological transport studies.	Standards in Genomic Sciences	2017
28958911	Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop.	Regul Toxicol Pharmacol	2017
28648395	The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans.	Journal of Biotechnology	2017
28987912	Framework for the quality assurance of 'omics technologies considering GLP requirements.	Regul Toxicol Pharmacol	2017
28801664	STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer.	Scientific Reports	2017
28927750	The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook.	Regul Toxicol Pharmacol	2017
29113939	A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis.	Regul Toxicol Pharmacol	2017
27939949	From the exposome to mechanistic understanding of chemical-induced adverse effects.	Environ Int	2017
27663666	Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop.	Regulatory Toxicology and Pharmacology	2016
26019233	Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding lociâ¿ .	Human Molecular Genetics	2015
24692846	Generation of IL-8 and IL-9 producing CD4âº T cells is affected by Th17 polarizing conditions and AHR ligands.	Mediators of Inflammation	2014
25264628	Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes.	PLoS One	2014
25262644	CEM-designer: design of custom expression microarrays in the post-ENCODE Era.	Journal of Biotechnology	2014
24594072	Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs.		2014
24677529	A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus.	Journal of Experimental Zoology Part B: Molecular and Developmental Evolution	2014
24512684	A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.		2014
22391564	MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma.	Oncogene	2013
22213152	CD31, EDNRB and TSPAN7 are promising prognostic markers in clear-cell renal cell carcinoma revealed by genome-wide expression analyses of primary tumors and metastases.	International Journal of Cancer	2012
22492638	Detection of differentially expressed segments in tiling array data.		2012
21622663	Computational discovery of human coding and non-coding transcripts with conserved splice sites.		2011
21370090	Bioinformatics for RNomics.	Methods in Molecular Biology	2011
20164839	The primary transcriptome of the major human pathogen Helicobacter pylori.	Nature	2010
19491402	Evolution of vault RNAs.	Molecular Biology and Evolution	2009
19750212	Fast mapping of short sequences with mismatches, insertions and deletions using index structures.	PLoS Comput Biol	2009
18832323	Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools.	Microbiology (United Kingdom)	2008
19090022	Duplicated RNA genes in teleost fish genomes.	Journal of Bioinformatics and Computational Biology	2008
18511233	NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.	Genomics	2008