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Author Details

Rui Benfeitas
Stockholm University
2014
35
15
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36794912Network-based multi-omics integration reveals metabolic at-risk profile within treated HIV-infection.Elife2023
37669378Systems-level temporal immune-metabolic profile in Crimean-Congo hemorrhagic fever virus infection.Proc Natl Acad Sci U S A2023
36945037Serum immuno-oncology markers carry independent prognostic information in patients with newly diagnosed metastatic breast cancer, from a prospective observational study.Breast Cancer Res2023
34657375Improvement of the performance of anticancer peptides using a drug repositioning pipeline.Biotechnol J2022
35580931Mitoribosomal defects aggravate liver cancer via aberrant glycolytic flux and T cell exhaustion.J Immunother Cancer2022
35537851Genome-scale metabolic models for natural and long-term drug-induced viral control in HIV infection.Life Sci Alliance2022
35437144Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target.Elife2022
36742342Systems Biology in ELIXIR: modelling in the spotlight.F1000Res2022
35933992Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.Cell Syst2022
36192034Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons.Life Sci Alliance2022
35095835Integrative Lipidomics and Metabolomics for System-Level Understanding of the Metabolic Syndrome in Long-Term Treated HIV-Infected Individuals.Front Immunol2022
35017663Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection.Commun Biol2022
33972017Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction.Elife2021
34862388Insights into the changes in the proteome of Alzheimer disease elucidated by a meta-analysis.Sci Data2021
34635603The central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome.Aging (Albany NY)2021
34680427Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.Biomedicines2021
34619366Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication.Mol Cell Proteomics2021
32337855The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease.Mol Syst Biol2020
33093567Epigenetic alterations in skin homing CD4<sup>+</sup>CLA<sup>+</sup> T cells of atopic dermatitis patients.Sci Rep2020
32691695Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells.Emerg Microbes Infect2020
32967266Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning.Cancers (Basel)2020
30606699Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.EBioMedicine2019
30905848Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning.EBioMedicine2019
29069445TCSBN: a database of tissue and cancer specific biological networks.Nucleic Acids Res2018
30242179Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome.Sci Rep2018
29988585Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.Front Physiol2018
30065658Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma.Front Physiol2018
30323767ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.Front Physiol2018
30482855Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes.Proc Natl Acad Sci U S A2018
28818916A pathology atlas of the human cancer transcriptome.Science2017
28744456New Challenges to Study Heterogeneity in Cancer Redox Metabolism.Front Cell Dev Biol2017
27155093Identification of line-specific strategies for improving carotenoid production in synthetic maize through data-driven mathematical modeling.Plant J2016
24952139Hydrogen peroxide metabolism and sensing in human erythrocytes: a validated kinetic model and reappraisal of the role of peroxiredoxin II.Free Radic Biol Med2014
26461310Is Peroxiredoxin II's peroxidase activity strongly inhibited in human erythrocytes?Free Radic Biol Med2014
26461315Is the Peroxiredoxin 2/Thioredoxin/Thioredoxin Reductase system in human erythrocytes designed for redox signaling?Free Radic Biol Med2014
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Collaborators

Adil Mardinoglu
Royal Institute of Technology Science for Life Laboratory Stockholm Sweden.
Co-authored papers 18
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 12
Cheng Zhang
KTH-Royal Institute of Technology
Co-authored papers 11
Muhammad Arif
KTH Royal Institute of Technology
Co-authored papers 10
Gholamreza Bidkhori
KTH - Royal Institute of Technology, Sweden AIVIVO Ltd. Unit 25
Co-authored papers 8
Jens Nielsen
Chalmers University of Technology
Co-authored papers 7
Sunjae Lee
Gwangju Institute of Science and Technology
Co-authored papers 5
??kos V??gv??ri
Karolinska Institutet
Co-authored papers 5
Zhengtao Liu
Shulan International Medical College, Zhejiang Shuren University
Co-authored papers 2
Marja-Riitta Taskinen
Co-authored papers 2
Kemal Sanli
Istanbul University
Co-authored papers 1
Dijana Djureinovic
Yale University School of Medicine
Co-authored papers 1
Katherine Wolstencroft
Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 1
Kalle von Feilitzen
KTH Royal Institute of Technology
Co-authored papers 1
Per-Henrik Edqvist
Uppsala University
Co-authored papers 1
Jochen M Schwenk
KTH Royal Institute of Technology
Co-authored papers 1
Per Oksvold
KTH-Royal Institute of Technology
Co-authored papers 1
Johanna S M Mattsson
Uppsala University
Co-authored papers 1
Richard D Unwin
Co-authored papers 1
Marco Pagni
Co-authored papers 1
Sophia Hober
KTH Royal Institute of Technology
Co-authored papers 1
Wolfgang M??ller
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Co-authored papers 1
Hans Brunnstr??m
Lund University
Co-authored papers 1
Linn Fagerberg
KTH Royal Institute of Technology
Co-authored papers 1
Juha Kere
Folkhalsan Research Center, University of Helsinki
Co-authored papers 1
Cecilia Lindskog
Uppsala University
Co-authored papers 1
Peter Nilsson
Linkoping University
Co-authored papers 1
Martin Golebiewski
Co-authored papers 1
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 1
Chris T Evelo
Maastricht University
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Release 1.2