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Author Details

Sheng-You Huang
Huazhong University of Science and Technology
2002
75
30
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34718205Docking and scoring for nucleic acid-ligand interactions: Principles and current status.Drug Discov Today2022
35505401Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond.J Cheminform2022
34718205Docking and scoring for nucleic acid-ligand interactions: Principles and current status.Drug Discov Today2022
35199137TRScore: a 3D RepVGG-based scoring method for ranking protein docking models.Bioinformatics2022
35068149Inclusion of Desolvation Energy into Protein-Protein Docking through Atomic Contact Potentials.J Chem Inf Model2022
35505401Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond.J Cheminform2022
35068149Inclusion of Desolvation Energy into Protein-Protein Docking through Atomic Contact Potentials.J Chem Inf Model2022
35199137TRScore: a 3D RepVGG-based scoring method for ranking protein docking models.Bioinformatics2022
33978686Full-length de novo protein structure determination from cryo-EM maps using deep learning.Bioinformatics2021
33693482Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes.Brief Bioinform2021
33954706EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps.Brief Bioinform2021
33978686Full-length de novo protein structure determination from cryo-EM maps using deep learning.Bioinformatics2021
33651624Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein Kinases.J Phys Chem B2021
34300045Modeling of the Long-Term Epidemic Dynamics of COVID-19 in the United States.Int J Environ Res Public Health2021
34468128NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes.J Chem Inf Model2021
33651624Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein Kinases.J Phys Chem B2021
33693482Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes.Brief Bioinform2021
34468128NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes.J Chem Inf Model2021
34300045Modeling of the Long-Term Epidemic Dynamics of COVID-19 in the United States.Int J Environ Res Public Health2021
33954706EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps.Brief Bioinform2021
31384919Topology-independent and global protein structure alignment through an FFT-based algorithm.Bioinformatics2020
32267149Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function.J Chem Inf Model2020
31994779Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.Proteins2020
32290077Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2.Viruses2020
32269383The HDOCK server for integrated protein-protein docking.Nat Protoc2020
33291885ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid-Ligand Interactions.J Chem Inf Model2020
32621227Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK Webserver.Methods Mol Biol2020
31384919Topology-independent and global protein structure alignment through an FFT-based algorithm.Bioinformatics2020
31994779Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.Proteins2020
33291885ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid-Ligand Interactions.J Chem Inf Model2020
32621227Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK Webserver.Methods Mol Biol2020
32269383The HDOCK server for integrated protein-protein docking.Nat Protoc2020
32267149Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function.J Chem Inf Model2020
32290077Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2.Viruses2020
31086984Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.Bioinformatics2019
31627318Exploring the Binding Mechanism and Dynamics of EndoMS/NucS to Mismatched dsDNA.Int J Mol Sci2019
31874620Pushing the accuracy limit of shape complementarity for protein-protein docking.BMC Bioinformatics2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
29982280PepBDB: a comprehensive structural database of biological peptide-protein interactions.Bioinformatics2019
31284555Dynamics and Mechanisms in the Recruitment and Transference of Histone Chaperone CIA/ASF1.Int J Mol Sci2019
31086984Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.Bioinformatics2019
31114906HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.Nucleic Acids Res2019
31045366Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction.J Chem Inf Model2019
31874620Pushing the accuracy limit of shape complementarity for protein-protein docking.BMC Bioinformatics2019
29982280PepBDB: a comprehensive structural database of biological peptide-protein interactions.Bioinformatics2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31627318Exploring the Binding Mechanism and Dynamics of EndoMS/NucS to Mismatched dsDNA.Int J Mol Sci2019
31284555Dynamics and Mechanisms in the Recruitment and Transference of Histone Chaperone CIA/ASF1.Int J Mol Sci2019
31045366Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction.J Chem Inf Model2019
31114906HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.Nucleic Acids Res2019
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Collaborators

Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 30
Yumeng Yan
Co-authored papers 16
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 5
Paul A Bates
The Francis Crick Institute
Co-authored papers 5
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 5
Yi Xiao
Co-authored papers 5
Chaok Seok
Seoul National University
Co-authored papers 5
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 5
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 5
Thom Vreven
Visterra Inc.
Co-authored papers 5
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 5
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 5
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 4
Sergei Grudinin
University Grenoble Alpes, CNRS
Co-authored papers 4
Dima Kozakov
Stony Brook University
Co-authored papers 4
Sandor Vajda
Boston University
Co-authored papers 4
Sanbo Qin
University of Illinois at Chicago
Co-authored papers 4
Hasup Lee
Seoul National University
Co-authored papers 4
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 4
Huan-Xiang Zhou
University of Illinois Chicago
Co-authored papers 4
Daisuke Kihara
Purdue University
Co-authored papers 4
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 4
Petras J Kundrotas
The University of Kansas
Co-authored papers 3
Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 3
Eiji Kanamori
Co-authored papers 3
Ilya A Vakser
The University of Kansas
Co-authored papers 3
Krishna Praneeth Kilambi
Co-authored papers 3
Julie C Mitchell
Co-authored papers 3
Dmitri Beglov
Boston University
Co-authored papers 3
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
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