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Author Details

Kimberly Van Auken
California Institute of Technology
2000
42
26
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37947958Semantic representation of neural circuit knowledge in Caenorhabditis elegans.Brain Inform2023
37579192Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways.Genetics2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37293039Biochemical Pathways Represented by Gene Ontology Causal Activity Models Identify Distinct Phenotypes Resulting from Mutations in Pathways.bioRxiv2023
37162850Semantic Representation of Neural Circuit Knowledge in <i>Caenorhabditis elegans</i>.bioRxiv2023
37947958Semantic representation of neural circuit knowledge in Caenorhabditis elegans.Brain Inform2023
37579192Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways.Genetics2023
37293039Biochemical Pathways Represented by Gene Ontology Causal Activity Models Identify Distinct Phenotypes Resulting from Mutations in Pathways.bioRxiv2023
37162850Semantic Representation of Neural Circuit Knowledge in <i>Caenorhabditis elegans</i>.bioRxiv2023
35134929WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.Genetics2022
35134929WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.Genetics2022
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
32185395Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.Database (Oxford)2020
31642470WormBase: a modern Model Organism Information Resource.Nucleic Acids Res2020
32185395Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.Database (Oxford)2020
32875947Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns.Open Biol2020
31642470WormBase: a modern Model Organism Information Resource.Nucleic Acids Res2020
32875947Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns.Open Biol2020
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
29069413WormBase 2017: molting into a new stage.Nucleic Acids Res2018
325503732018 Update on Protein-Protein Interaction Data in WormBase.MicroPubl Biol2018
29761466Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.Methods Mol Biol2018
29523070Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.BMC Bioinformatics2018
29069413WormBase 2017: molting into a new stage.Nucleic Acids Res2018
325503732018 Update on Protein-Protein Interaction Data in WormBase.MicroPubl Biol2018
29523070Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.BMC Bioinformatics2018
29761466Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.Methods Mol Biol2018
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
26873781Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology.J Biomed Inform2016
26917558Guidelines for the functional annotation of microRNAs using the Gene Ontology.RNA2016
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
26578572WormBase 2016: expanding to enable helminth genomic research.Nucleic Acids Res2016
27589961Overview of the interactive task in BioCreative V.Database (Oxford)2016
26578572WormBase 2016: expanding to enable helminth genomic research.Nucleic Acids Res2016
27589961Overview of the interactive task in BioCreative V.Database (Oxford)2016
26917558Guidelines for the functional annotation of microRNAs using the Gene Ontology.RNA2016
26873781Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology.J Biomed Inform2016
24194605WormBase 2014: new views of curated biology.Nucleic Acids Res2014
24194605WormBase 2014: new views of curated biology.Nucleic Acids Res2014
25157073Overview of the gene ontology task at BioCreative IV.Database (Oxford)2014
24885854A method for increasing expressivity of Gene Ontology annotations using a compositional approach.BMC Bioinformatics2014
25070993BC4GO: a full-text corpus for the BioCreative IV GO task.Database (Oxford)2014
25070993BC4GO: a full-text corpus for the BioCreative IV GO task.Database (Oxford)2014
25157073Overview of the gene ontology task at BioCreative IV.Database (Oxford)2014
24885854A method for increasing expressivity of Gene Ontology annotations using a compositional approach.BMC Bioinformatics2014
23327936An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database (Oxford)2013
23842463A guide to best practices for Gene Ontology (GO) manual annotation.Database (Oxford)2013
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Collaborators

California Institute of Technology
Co-authored papers 24
California Institute of Technology
Co-authored papers 19
Heidelberg University Biochemistry Center
Co-authored papers 19
California Institute of Technology
Co-authored papers 14
Ontario Institute for Cancer Research
Co-authored papers 13
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 12
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Co-authored papers 9
California Institute of Technology
Co-authored papers 9
California Institute of Technology
Co-authored papers 8
University of Cambridge
Co-authored papers 7
Cornell University
Co-authored papers 7
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 7
Lawrence Berkeley National Laboratory
Co-authored papers 6
Co-authored papers 6
NYU Grossman School of Medicine
Co-authored papers 6
Co-authored papers 6
California Institute of Technology
Co-authored papers 6
University of Cambridge
Co-authored papers 5
University College London, Institute for Cardiovascular Science
Co-authored papers 5
Medical College of Wisconsin
Co-authored papers 5
European Bioinformatics Institute
Co-authored papers 5
Massachusetts Institute of Technology
Co-authored papers 5
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University of Geneva
Co-authored papers 5
University of Delaware
Co-authored papers 5
Wellcome Sanger Institute
Co-authored papers 5
Renaissance Computing Institute, University of North Carolina
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Center for Genetic Medicine, Northwestern University.
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Oregon State University
Co-authored papers 4