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Author Details

Baldo Oliva
Universitat Pompeu Fabra
1991
154
31
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36929574The P4-ATPase Drs2 interacts with and stabilizes the multisubunit tethering complex TRAPPIII in yeast.EMBO Rep2023
37796837SBILib: a handle for protein modeling and engineering.Bioinformatics2023
37578729Theoretical 3D Modeling of NLRP3 Inflammasome Complex.Methods Mol Biol2023
36958605CM2D3: Furnishing the Human Interactome with Structural Models of Protein Complexes Derived by Comparative Modeling and Docking.J Mol Biol2023
37002678A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status.CPT Pharmacometrics Syst Pharmacol2023
37165099Schlafen 12 restricts HIV-1 latency reversal by a codon-usage dependent post-transcriptional block in CD4+ T cells.Commun Biol2023
36674792A Genome-Wide Functional Screen Identifies Enhancer and Protective Genes for Amyloid Beta-Peptide Toxicity.Int J Mol Sci2023
34672126First Description of Late-Onset Autoinflammatory Disease Due to Somatic NLRC4 Mosaicism.Arthritis Rheumatol2022
35802274Correction to: Characterization of Novel Pathogenic Variants Leading to Caspase-8 Cleavage-Resistant RIPK1-Induced Autoinflammatory Syndrome.J Clin Immunol2022
35839629An inhibitor of interaction between the transcription factor NRF2 and the E3 ubiquitin ligase adapter β-TrCP delivers anti-inflammatory responses in mouse liver.Redox Biol2022
35716229Characterization of Novel Pathogenic Variants Leading to Caspase-8 Cleavage-Resistant RIPK1-Induced Autoinflammatory Syndrome.J Clin Immunol2022
35848924Melanoma RBPome identification reveals PDIA6 as an unconventional RNA-binding protein involved in metastasis.Nucleic Acids Res2022
36499491Amyloid β-Peptide Causes the Permanent Activation of CaMKIIα through Its Oxidation.Int J Mol Sci2022
35931641Corrigendum to "An inhibitor of interaction between the transcription factor NRF2 and the E3 ubiquitin ligase adapter β-TrCP delivers anti-inflammatory responses in mouse liver" [Redox Biol. 55 (2022) 102396/PMID: 35839629].Redox Biol2022
36304303Prediction of Adverse Drug Reaction Linked to Protein Targets Using Network-Based Information and Machine Learning.Front Bioinform2022
36267327Differential regulation of insulin signalling by monomeric and oligomeric amyloid beta-peptide.Brain Commun2022
34888728Prediction of Protein-Protein Binding Affinities from Unbound Protein Structures.Methods Mol Biol2022
32976910Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.J Mol Biol2021
33494438Evaluation of Computationally Designed Peptides against TWEAK, a Cytokine of the Tumour Necrosis Factor Ligand Family.Int J Mol Sci2021
33659043Head to head evaluation of second generation ALK inhibitors brigatinib and alectinib as first-line treatment for ALK+ NSCLC using an <i>in silico</i> systems biology-based approach.Oncotarget2021
34862378Find and cut-and-transfer (FiCAT) mammalian genome engineering.Nat Commun2021
34524838Sensing low intracellular potassium by NLRP3 results in a stable open structure that promotes inflammasome activation.Sci Adv2021
34803764Methods to Develop an <i>in silico</i> Clinical Trial: Computational Head-to-Head Comparison of Lisdexamfetamine and Methylphenidate.Front Psychiatry2021
34769056A Collection of Designed Peptides to Target SARS-CoV-2 Spike RBD-ACE2 Interaction.Int J Mol Sci2021
34679164Mining drug-target and drug-adverse drug reaction databases to identify target-adverse drug reaction relationships.Database (Oxford)2021
34297086Comparative Analysis of Mammal Genomes Unveils Key Genomic Variability for Human Life Span.Mol Biol Evol2021
33937764On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction.NAR Genom Bioinform2021
34068417<i>CACNA1A</i> Mutations Causing Early Onset Ataxia: Profiling Clinical, Dysmorphic and Structural-Functional Findings.Int J Mol Sci2021
33435983An ensemble learning approach for modeling the systems biology of drug-induced injury.Biol Direct2021
33407073SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions.BMC Bioinformatics2021
32797645Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions.Protein Sci2020
33575598On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF.NAR Genom Bioinform2020
32053711In-silico simulated prototype-patients using TPMS technology to study a potential adverse effect of sacubitril and valsartan.PLoS One2020
33268808Adaptive selection drives TRPP3 loss-of-function in an Ethiopian population.Sci Rep2020
33006999In-silico drug repurposing study predicts the combination of pirfenidone and melatonin as a promising candidate therapy to reduce SARS-CoV-2 infection progression and respiratory distress caused by cytokine storm.PLoS One2020
30472187Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription.Mol Cell2019
31693680Understanding allergic multimorbidity within the non-eosinophilic interactome.PLoS One2019
31360335Human Albumin Impairs Amyloid β-peptide Fibrillation Through its C-terminus: From docking Modeling to Protection Against Neurotoxicity in Alzheimer's disease.Comput Struct Biotechnol J2019
30899024The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins.Nat Commun2019
31044563Alternative interaction sites in the influenza A virus nucleoprotein mediate viral escape from the importin-α7 mediated nuclear import pathway.FEBS J2019
30851278GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets.J Mol Biol2019
28799013Phospho-mimicking Atf1 mutants bypass the transcription activating function of the MAP kinase Sty1 of fission yeast.Curr Genet2018
30134192ο9-tetrahydrocannabinol modulates the proteasome system in the brain.Biochem Pharmacol2018
29932108Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology.Pharmaceuticals (Basel)2018
30319692Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response.Front Genet2018
29507103Transcription Factor NRF2 as a Therapeutic Target for Chronic Diseases: A Systems Medicine Approach.Pharmacol Rev2018
29028891On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.Bioinformatics2018
27956148iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.J Mol Biol2017
28467807The antigen-binding fragment of human gamma immunoglobulin prevents amyloid β-peptide folding into β-sheet to form oligomers.Oncotarget2017
28598986Computational analysis of multimorbidity between asthma, eczema and rhinitis.PLoS One2017
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Collaborators

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Co-authored papers 33
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Autonomous University of Barcelona
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Institucio Catalana de Recerca i Estudis Avancats (ICREA)
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Imperial College London
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Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 4
Jos?? M Fern??ndez-Fern??ndez
Universitat Pompeu Fabra
Co-authored papers 3
Ren?? B??ttcher
Universitat Pompeu Fabra
Co-authored papers 2
Paul A Bates
The Francis Crick Institute
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Esther Paulo
Cardiovascular Research Institute, University of California at San Francisco
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Francesc Posas
Universitat Pompeu Fabra
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Judith Klein-Seetharaman
School of Molecular Sciences & College of Health Solutions, Arizona State University
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Release 1.2