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Author Details

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
1983
607
107
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
34719530Isolation of SARS-CoV-2 from COVID-19 Patients and an Asymptomatic Individual.Jpn J Infect Dis2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
36333502Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features.Nat Genet2022
34719530Isolation of SARS-CoV-2 from COVID-19 Patients and an Asymptomatic Individual.Jpn J Infect Dis2022
34719530Isolation of SARS-CoV-2 from COVID-19 Patients and an Asymptomatic Individual.Jpn J Infect Dis2022
35134173Two ovarian candidate enhancers, identified by time series enhancer RNA analyses, harbor rare genetic variations identified in ovarian insufficiency.Hum Mol Genet2022
35114569Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML.Transl Oncol2022
36333502Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features.Nat Genet2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35114569Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML.Transl Oncol2022
35134173Two ovarian candidate enhancers, identified by time series enhancer RNA analyses, harbor rare genetic variations identified in ovarian insufficiency.Hum Mol Genet2022
34719530Isolation of SARS-CoV-2 from COVID-19 Patients and an Asymptomatic Individual.Jpn J Infect Dis2022
32878723Significance of HMGA2 expression as independent poor prognostic marker in perihilar and distal cholangiocarcinoma resected with curative intent.Eur J Surg Oncol2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
33682233Cancer-associated fibroblast migration in non-small cell lung cancers is modulated by increased integrin α11 expression.Mol Oncol2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
33931666Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
32878723Significance of HMGA2 expression as independent poor prognostic marker in perihilar and distal cholangiocarcinoma resected with curative intent.Eur J Surg Oncol2021
33280191CREB3L1 overexpression as a potential diagnostic marker of Philadelphia chromosome-negative myeloproliferative neoplasms.Cancer Sci2021
33280191CREB3L1 overexpression as a potential diagnostic marker of Philadelphia chromosome-negative myeloproliferative neoplasms.Cancer Sci2021
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34389798Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
33682233Cancer-associated fibroblast migration in non-small cell lung cancers is modulated by increased integrin α11 expression.Mol Oncol2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
33931666Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34389798Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
33280191CREB3L1 overexpression as a potential diagnostic marker of Philadelphia chromosome-negative myeloproliferative neoplasms.Cancer Sci2021
33280191CREB3L1 overexpression as a potential diagnostic marker of Philadelphia chromosome-negative myeloproliferative neoplasms.Cancer Sci2021
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
32161175Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences.J Virol2020
32161175Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences.J Virol2020
32214089CDK1 dependent phosphorylation of hTERT contributes to cancer progression.Nat Commun2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33187095Development of a Tet-On Inducible Expression System for the Anhydrobiotic Cell Line, Pv11.Insects2020
33320908Scanning single-molecule counting system for Eprobe with highly simple and effective approach.PLoS One2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33187095Development of a Tet-On Inducible Expression System for the Anhydrobiotic Cell Line, Pv11.Insects2020
33320908Scanning single-molecule counting system for Eprobe with highly simple and effective approach.PLoS One2020
32214089CDK1 dependent phosphorylation of hTERT contributes to cancer progression.Nat Commun2020
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
31719197Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians.Proc Natl Acad Sci U S A2019
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Collaborators

Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 214
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 126
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 108
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 107
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 105
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 103
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 86
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 65
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 60
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 44
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 42
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 39
Yasuhiro Tomaru
Co-authored papers 38
Chikatoshi Kai
Co-authored papers 37
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 36
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 34
Marina Lizio
Cerevance Ltd
Co-authored papers 29
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 29
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 28
Hidemasa Bono
Hiroshima University
Co-authored papers 27
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 26
Kazuhiro Shibata
Co-authored papers 25
Shinji Kondo
Co-authored papers 25
Albin Sandelin
University of Copenhagen
Co-authored papers 25
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 24
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 21
Hideaki Konno
Co-authored papers 21
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 21
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Christine A Wells
The University of Melbourne
Co-authored papers 20
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