Skip to Main Content

Author Details

Tiago C Silva
University of Miami Miller School of Medicine
2016
23
14
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35100398MethReg: estimating the regulatory potential of DNA methylation in gene transcription.Nucleic Acids Res2022
35883104DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers.J Exp Clin Cancer Res2022
34370013Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma.Nucleic Acids Res2021
33626341Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway.Cell Rep2021
33902726Sex-specific DNA methylation differences in Alzheimer's disease pathology.Acta Neuropathol Commun2021
33931649A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes.Nat Commun2021
33631002DNA methylation-based signatures classify sporadic pituitary tumors according to clinicopathological features.Neuro Oncol2021
35003218PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples.Front Genet2021
34497635LR Hunting: A Random Forest Based Cell-Cell Interaction Discovery Method for Single-Cell Gene Expression Data.Front Genet2021
34725325Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes.Nat Commun2021
34183671Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes.Nat Commun2021
31551365RNA-Binding Protein <i>ZFP36L1</i> Suppresses Hypoxia and Cell-Cycle Signaling.Cancer Res2020
31900418Interpreting pathways to discover cancer driver genes with Moonlight.Nat Commun2020
33257653Epigenome-wide meta-analysis of DNA methylation differences in prefrontal cortex implicates the immune processes in Alzheimer's disease.Nat Commun2020
32430990PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi-Omics Data.Proteomics2020
30364927ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.Bioinformatics2019
31619158GENAVi: a shiny web application for gene expression normalization, analysis and visualization.BMC Genomics2019
30835723New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.PLoS Comput Biol2019
28860350Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas.Gut2018
30361341The chromatin accessibility landscape of primary human cancers.Science2018
29036500Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications.Neuro Oncol2018
28134831SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data.Int J Mol Sci2017
26704973TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.Nucleic Acids Res2016
  • 1 - 23 of 23

Recommended Authors

Daniel H??bschmann
Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM)
Career Start Year 2016
Number of shared co-authors 0
Yongsheng Li
Harbin Medical University
Career Start Year 2011
Number of shared co-authors 0
Hui Shen
Van Andel Institute
Career Start Year 2010
Number of shared co-authors 29
Hans-Ulrich Klein
Columbia University Irving Medical Center
Career Start Year 2009
Number of shared co-authors 0
Suhn K Rhie
Keck School of Medicine of USC
Career Start Year 2009
Number of shared co-authors 10
Lukas Chavez
University of California San Diego
Career Start Year 2008
Number of shared co-authors 1
Qiyuan Li
National Institute of Data Science in Health and Medicine, Xiamen University
Career Start Year 2008
Number of shared co-authors 4
Siyuan Zheng
Greehey Children's Cancer Research Institute
Career Start Year 2007
Number of shared co-authors 15
J??ri Reimand
Ontario Institute for Cancer Research
Career Start Year 2007
Number of shared co-authors 5
Yassen Assenov
German Cancer Research Center (DKFZ)
Career Start Year 2006
Number of shared co-authors 0
Altuna Akalin
Berlin Institute for Medical Systems Biology
Career Start Year 2006
Number of shared co-authors 0
Andrew E Teschendorff
UCL Cancer Institute, University College London
Career Start Year 2005
Number of shared co-authors 3
Chao Cheng
Baylor College of Medicine
Career Start Year 2005
Number of shared co-authors 0
Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2005
Number of shared co-authors 4
Brock C Christensen
Geisel School of Medicine, Dartmouth College
Career Start Year 2005
Number of shared co-authors 0
Kai Wang
Pfizer Inc.
Career Start Year 2004
Number of shared co-authors 0
Steffen Durinck
Genentech Inc.
Career Start Year 2004
Number of shared co-authors 4
Xianghong Jasmine Zhou
David Geffen School of Medicine, University of California at Los Angeles
Career Start Year 2004
Number of shared co-authors 1
Mathieu Lupien
Princess Margaret Cancer Research Centre
Career Start Year 2003
Number of shared co-authors 0
Leslie Cope
Johns Hopkins University School of Medicine
Career Start Year 2003
Number of shared co-authors 12
Pavel Sumazin
Baylor College of Medicine
Career Start Year 2003
Number of shared co-authors 11
Howard H Yang
Center for Cancer Research, National Cancer Institute
Career Start Year 2002
Number of shared co-authors 2
Mikhail G Dozmorov
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 1
Yidong Chen
The University of Texas Health Science Center at San Antonio
Career Start Year 2001
Number of shared co-authors 0
Ting Wang
Washington University School of Medicine
Career Start Year 2001
Number of shared co-authors 4
Kai Tan
University of Pennsylvania
Career Start Year 1999
Number of shared co-authors 0
Ramana V Davuluri
The Wistar Institute
Career Start Year 1999
Number of shared co-authors 2
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Career Start Year 1998
Number of shared co-authors 8
Tim H-M Huang
University of Texas Health San Antonio (UTHSA)
Career Start Year 1997
Number of shared co-authors 1
Holger Heyn
Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra
Career Start Year 1988
Number of shared co-authors 9

Collaborators

Benjamin P Berman
Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem
Co-authored papers 9
Antonio Colaprico
Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine
Co-authored papers 8
Houtan Noushmehr
Henry Ford Hospital
Co-authored papers 7
Lily Wang
College of Science, The Australian National University
Co-authored papers 7
Thais S Sabedot
Co-authored papers 3
Simon G Coetzee
Co-authored papers 3
Tathiane M Malta
School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo
Co-authored papers 3
Amy G Robertson
Present address: Dxige Research Inc.
Co-authored papers 2
Bing Zhang
Baylor College of Medicine
Co-authored papers 2
Christopher K Wong
University of California
Co-authored papers 2
Peter W Laird
Van Andel Institute
Co-authored papers 2
Katherine A Hoadley
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 2
Simon A Gayther
Cedars-Sinai Medical Center
Co-authored papers 2
Jean Claude Zenklusen
National Cancer Institute
Co-authored papers 2
Mauro A A Castro
Federal University of Parana
Co-authored papers 2
Ina Felau
National Cancer Institute
Co-authored papers 2
Clarice S Groeneveld
CNRS, Institut Curie, PSL Research University, Universite Paris Cite
Co-authored papers 1
Seung Woo Cho
Center for Genomic Integrity, Institute for Basic Science
Co-authored papers 1
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 1
Marcin Imielinski
Co-authored papers 1
Wanding Zhou
University of Pennsylvania
Co-authored papers 1
Beth Y Karlan
David Geffen School of Medicine, University of California los angeles
Co-authored papers 1
Laura Cantini
Institut Pasteur, Universite Paris Cite, CNRS UMR 3738
Co-authored papers 1
Lijing Yao
Co-authored papers 1
Michele Ceccarelli
Co-authored papers 1
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 1
Olivier Elemento
Meyer Cancer Center
Co-authored papers 1
Maxwell R Mumbach
Broad Institute of MIT and Harvard
Co-authored papers 1
Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 1
David Neil Hayes
Center for Cancer Research, University of Tennessee Health Science Center
Co-authored papers 1
Release 1.2