Author details

Full Name

Ioannis Tsamardinos

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37900054	Learning biologically-interpretable latent representations for gene expression data: Pathway Activity Score Learning Algorithm.		2023
37672022	Automated machine learning for genome wide association studies.	Bioinformatics	2023
37939182	XPF interacts with TOP2B for R-loop processing and DNA looping on actively transcribed genes.		2023
38025660	A characteristic cerebellar biosignature for bipolar disorder, identified with fully automatic machine learning.		2023
35328380	Tissue-Specific Methylation Biosignatures for Monitoring Diseases: An In Silico Approach.	International Journal of Molecular Sciences	2022
35710826	Just Add Data: automated predictive modeling for knowledge discovery and feature selection.	NPJ Precis Oncol	2022
35830399	Out-of-Sample Tuning for Causal Discovery.	IEEE Transactions on Neural Networks and Learning Systems	2022
35380712	The Essentials of Multiomics.	Oncologist	2022
35882102	Corrigendum to "A validated clinical risk prediction model for lung cancer in smokers of all ages and exposure types: A HUNT study" [EBioMedicine 31 (2018) 36-46].	eBioMedicine	2022
36261477	A machine learning approach utilizing DNA methylation as an accurate classifier of COVID-19 disease severity.	Scientific Reports	2022
36569551	Don't lose samples to estimation.		2022
33035156	The Î³-OMP Algorithm for Feature Selection With Application to Gene Expression Data.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2022
35207316	Liquid Biopsy in Type 2 Diabetes Mellitus Management: Building Specific Biosignatures via Machine Learning.	Journal of Clinical Medicine	2022
34720675	Extending greedy feature selection algorithms to multiple solutions.	Data Mining and Knowledge Discovery	2021
33747045	STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline.	Front Genet	2021
33901697	Forecasting military mental health in a complete sample of Danish military personnel deployed between 1992-2013.	J Affect Disord	2021
34061904	Prediction of outcome in patients with non-small cell lung cancer treated with second line PD-1/PDL-1 inhibitors based on clinical parameters: Results from a prospective, single institution study.	PLoS ONE	2021
34302024	Automated machine learning optimizes and accelerates predictive modeling from COVID-19 high throughput datasets.	Scientific Reports	2021
33918195	Deciphering the Methylation Landscape in Breast Cancer: Diagnostic and Prognostic Biosignatures through Automated Machine Learning.	Cancers	2021
32962113	Accurate Blood-Based Diagnostic Biosignatures for Alzheimer's Disease via Automated Machine Learning.	Journal of Clinical Medicine	2020
31669573	Translating vitamin D transcriptomics to clinical evidence: Analysis of data in asthma and chronic obstructive pulmonary disease, followed by clinical data meta-analysis.	Journal of Steroid Biochemistry and Molecular Biology	2020
32100455	Learning Pathway Dynamics from Single-Cell Proteomic Data: A Comparative Study.	Cytometry. Part A : the journal of the International Society for Analytical Cytology	2020
32706722	Applicability of an Automated Model and Parameter Selection in the Prediction of Screening-Level PTSD in Danish Soldiers Following Deployment: Development Study of Transferable Predictive Models Using Automated Machine Learning.	JMIR Medical Informatics	2020
32650268	Somatic copy number aberrations detected in circulating tumor DNA can hold diagnostic value for early detection of hepatocellular carcinoma.	eBioMedicine	2020
30715136	A unified approach for sparse dynamical system inference from temporal measurements.		2019
31803478	'Reduced' HUNT model outperforms NLST and NELSON study criteria in predicting lung cancer in the Danish screening trial.	BMJ Open Respiratory Research	2019
31692248	Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization.	Cytometry A	2019
31666984	A data driven approach reveals disease similarity on a molecular level.	npj Systems Biology and Applications	2019
30474411	Toward Automatic Risk Assessment to Support Suicide Prevention.	Crisis	2019
30643192	Circulating cell-free DNA in breast cancer: size profiling, levels, and methylation patterns lead to prognostic and predictive classifiers.	Oncogene	2019
30978178	Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation.	PLoS Biol	2019
31447879	Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing.	Frontiers in Genetics	2019
30906113	A greedy feature selection algorithm for Big Data of high dimensionality.	Machine Learning	2019
31427643	Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients.	Sci Rep	2019
31404336	Structural Basis of the Subcellular Topology Landscape of .	Frontiers in Microbiology	2019
31053557	Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression.	EBioMedicine	2019
30957008	Constraint-based causal discovery with mixed data.	International Journal of Data Science and Analytics	2018
30393425	Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation.	Machine Learning	2018
29357817	Feature selection for high-dimensional temporal data.	BMC Bioinformatics	2018
29688366	BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology.	Database : the journal of biological databases and curation	2018
29678673	A Validated Clinical Risk Prediction Model for Lung Cancer in Smokers of All Ages and Exposure Types: A HUNT Study.	eBioMedicine	2018
28607462	MatureP: prediction of secreted proteins with exclusive information from their mature regions.	Scientific Reports	2017
28983114	Predicting Causal Relationships from Biological Data: Applying Automated Causal Discovery on Mass Cytometry Data of Human Immune Cells.	Sci Rep	2017
28525568	SCENERY: a web application for (causal) network reconstruction from cytometry data.	Nucleic Acids Res	2017
27812137	omicsNPC: Applying the Non-Parametric Combination Methodology to the Integrative Analysis of Heterogeneous Omics Data.	PLoS ONE	2016
27294826	A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.	BMC Bioinformatics	2016
27465624	Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.	BMC Bioinformatics	2016
27756323	Excerpts from the 1st international NTNU symposium on current and future clinical biomarkers of cancer: innovation and implementation, June 16th and 17th 2016, Trondheim, Norway.	J Transl Med	2016
25953402	Realization of a service for the long-term risk assessment of diabetes-related complications.	Journal of Diabetes and its Complications	2015
25592602	T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes.	Pac Symp Biocomput	2015